bio-sambamba
Full description goes here
Note: this software is under active development!
Installation
rake build
rake install
In order to use the gem, you also need sambamba
tool installed.
For that, do the following:
- install DMD compiler
- install Ragel finite state machine compiler
- clone sambamba repository and compile the tool
git clone https://github.com/lomereiter/sambamba.git
cd sambamba/CLItools/
make
- place the executable file
build/sambamba
to somewhere in your $PATH, for example:
cp build/sambamba /usr/local/bin
Usage
require 'bio-sambamba'
The API doc is online. For more code examples see the test files in the source tree.
Project home page
Information on the source tree, documentation, examples, issues and how to contribute, see
http://github.com/lomereiter/bioruby-sambamba
The BioRuby community is on IRC server: irc.freenode.org, channel: #bioruby.
Cite
If you use this software, please cite one of
- BioRuby: bioinformatics software for the Ruby programming language
- Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics
Biogems.info
This Biogem is published at #bio-sambamba
Copyright
Copyright (c) 2012 Artem Tarasov. See LICENSE.txt for further details.