Class: Bio::DDBJ::XML::DDBJ

Inherits:

Bio::DDBJ::XML

• Object
• SOAPWSDL
• Bio::DDBJ::XML
• Bio::DDBJ::XML::DDBJ

Defined in:

lib/bio/io/ddbjxml.rb

Overview

DDBJ

Retrieves a sequence entry from the DDBJ DNA Data Bank Japan.

• xml.nig.ac.jp/doc/DDBJ.txt

Examples

serv = Bio::DDBJ::XML::DDBJ.new
puts serv.getFFEntry('AB000050')
puts serv.getXMLEntry('AB000050')
puts serv.getFeatureInfo('AB000050', 'cds')
puts serv.getAllFeatures('AB000050')
puts serv.getRelatedFeatures('AL121903', '59000', '64000')
puts serv.getRelatedFeaturesSeq('AL121903', '59000', '64000')

WSDL Methods

• getFFEntry(accession)

• getXMLEntry(accession)

• getFeatureInfo(accession, feature)

• getAllFeatures(accession)

• getRelatedFeatures(accession, start, stop)

• getRelatedFeaturesSeq(accession, start, stop)

References

• xml.nig.ac.jp/doc/DDBJ.txt

Constant Summary

SERVER_URI =

BASE_URI + "DDBJ.wsdl"

Constants inherited from Bio::DDBJ::XML

BASE_URI

Instance Attribute Summary

Attributes inherited from SOAPWSDL

#log, #wsdl

Method Summary

Methods inherited from Bio::DDBJ::XML

#initialize

Methods inherited from SOAPWSDL

#initialize, #list_methods

Constructor Details

This class inherits a constructor from Bio::DDBJ::XML

Dynamic Method Handling

This class handles dynamic methods through the method_missing method in the class Bio::SOAPWSDL