Class: Bio::DDBJ::XML::Fasta

Inherits:

Bio::DDBJ::XML

• Object
• SOAPWSDL
• Bio::DDBJ::XML
• Bio::DDBJ::XML::Fasta

Defined in:

lib/bio/io/ddbjxml.rb

Overview

Fasta

Searching database using the Fasta package.

• xml.nig.ac.jp/doc/Fasta.txt

Examples

serv = Bio::DDBJ::XML::Fasta.new
query = ">Test\nMSDGAVQPDG GQPAVRNERA TGSGNGSGGG GGGGSGGVGI"

puts serv.searchSimple('fasta34', 'PDB', query)
query = ">Test\nAGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC"
puts serv.searchParam('fastx34_t', 'PDB', query, '-n')

WSDL Methods

• searchSimple(program, database, query)

• searchParam(program, database, query, param)

References

• xml.nig.ac.jp/doc/Fasta.txt

Constant Summary

SERVER_URI =

BASE_URI + "Fasta.wsdl"

Constants inherited from Bio::DDBJ::XML

BASE_URI

Instance Attribute Summary

Attributes inherited from SOAPWSDL

#log, #wsdl

Method Summary

Methods inherited from Bio::DDBJ::XML

#initialize

Methods inherited from SOAPWSDL

#initialize, #list_methods

Constructor Details

This class inherits a constructor from Bio::DDBJ::XML

Dynamic Method Handling

This class handles dynamic methods through the method_missing method in the class Bio::SOAPWSDL