Class: Bio::DDBJ::XML::Gib

Inherits:
Bio::DDBJ::XML show all
Defined in:
lib/bio/io/ddbjxml.rb

Overview

Gib

Genome Information broker

Examples

serv = Bio::DDBJ::XML::Gib.new
puts serv.getOrganismList
puts serv.getChIDList
puts serv.getOrganismNameFromChid('Sent_CT18:')
puts serv.getChIDFromOrganismName('Aquifex aeolicus VF5')
puts serv.getAccession('Ecol_K12_MG1655:')
puts serv.getPieceNumber('Mgen_G37:')
puts serv.getDivision('Mgen_G37:')
puts serv.getType('Mgen_G37:')
puts serv.getCDS('Aaeo_VF5:ece1')
puts serv.getFlatFile('Nost_PCC7120:pCC7120zeta')
puts serv.getFastaFile('Nost_PCC7120:pCC7120zeta', 'cdsaa')

WSDL Methods

  • getOrganismList

  • getChIDList

  • getOrganismNameFromChid(chid)

  • getChIDFromOrganismName(orgName)

  • getAccession(chid)

  • getPieceNumber(chid)

  • getDivision(chid)

  • getType(chid)

  • getFlatFile(chid)

  • getFastaFile(chid, type)

  • getCDS(chid)

References

Constant Summary collapse

SERVER_URI = 
BASE_URI + "Gib.wsdl"

Constants inherited from Bio::DDBJ::XML

BASE_URI

Instance Attribute Summary

Attributes inherited from SOAPWSDL

#log, #wsdl

Method Summary

Methods inherited from Bio::DDBJ::XML

#initialize

Methods inherited from SOAPWSDL

#initialize, #list_methods

Constructor Details

This class inherits a constructor from Bio::DDBJ::XML

Dynamic Method Handling

This class handles dynamic methods through the method_missing method in the class Bio::SOAPWSDL