Class: Bio::NCBI

Inherits:

Object

• Object
• Bio::NCBI

Defined in:

lib/bio/io/ncbirest.rb,
lib/bio.rb,
lib/bio/io/ncbisoap.rb

Overview

Description

The Bio::NCBI::REST class provides REST client for the NCBI E-Utilities

Entrez utilities index:

• www.ncbi.nlm.nih.gov/entrez/utils/utils_index.html

Usage

Bio::NCBI::REST.esearch("tardigrada", {"db"=>"nuccore", "rettype"=>"count"})
Bio::NCBI::REST.esearch("tardigrada", {"db"=>"nuccore", "rettype"=>"gb"})
Bio::NCBI::REST.esearch("yeast kinase", {"db"=>"nuccore", "rettype"=>"gb", "retmode"=>"xml", "retmax"=>5})
Bio::NCBI::REST.efetch("185041", {"db"=>"nuccore", "rettype"=>"gb"})
Bio::NCBI::REST.efetch("J00231", {"db"=>"nuccore", "rettype"=>"gb", "retmode"=>"xml"})

Defined Under Namespace

Classes: REST, SOAP