Class: Bio::UniProt
Overview
Description
Parser class for SwissProt database entry.# See also Bio::SPTR class. This class holds name space for UniProtKB/SwissProt specific methods.
UniProtKB/SwissProt specific methods are defined in this class. Shared methods for UniProtKB/SwissProt and TrEMBL classes are defined in Bio::SPTR class.
Examples
str = File.read("p53_human.swiss")
obj = Bio::UniProt.new(str)
obj.entry_id #=> "P53_HUMAN"
Referencees
-
UniProt uniprot.org/
-
The UniProtKB/SwissProt/TrEMBL User Manual www.expasy.org/sprot/userman.html
Constant Summary
Constants included from EMBLDB::Common
EMBLDB::Common::DELIMITER, EMBLDB::Common::RS, EMBLDB::Common::TAGSIZE
Method Summary
Methods inherited from SPTR
#cc, #cc_web_resource, #dr, #dt, #embl_dr, #entry_id, #ft, #gene_name, #gene_names, #gn, #hi, #id_line, #molecule, #oh, #os, #ox, #protein_name, #ref, #references, #seq, #sequence_length, #set_RN, #sq, #synonyms
Methods included from EMBLDB::Common
#ac, #accession, #de, #dr, #initialize, #kw, #oc, #og, #os, #ref, #references