Class: Bio::DAS::SEGMENT

Inherits:

Object

• Object
• Bio::DAS::SEGMENT

show all

Defined in:

lib/bio/io/das.rb

Instance Attribute Summary (collapse)

• - (Object) description

  Returns the value of attribute description.

• - (Object) entry_id

  Returns the value of attribute entry_id.

• - (Object) features

  Returns the value of attribute features.

• - (Object) label

  Returns the value of attribute label.

• - (Object) orientation

  Returns the value of attribute orientation.

• - (Object) start

  Returns the value of attribute start.

• - (Object) stop

  Returns the value of attribute stop.

• - (Object) subparts

  Returns the value of attribute subparts.

• - (Object) types

  Returns the value of attribute types.

• - (Object) version

  Returns the value of attribute version.

Class Method Summary (collapse)

• + (Object) region(entry_id, start, stop)

Instance Method Summary (collapse)

• - (SEGMENT) initialize constructor

  A new instance of SEGMENT.

350
351
352
353

# File 'lib/bio/io/das.rb', line 350

def initialize
  @features = Array.new		# for FEATURE
  @types = Array.new		# for TYPE
end

354
355
356

# File 'lib/bio/io/das.rb', line 354

def description
  @description
end

354
355
356

# File 'lib/bio/io/das.rb', line 354

def entry_id
  @entry_id
end

354
355
356

# File 'lib/bio/io/das.rb', line 354

def features
  @features
end

354
355
356

# File 'lib/bio/io/das.rb', line 354

def label
  @label
end

354
355
356

# File 'lib/bio/io/das.rb', line 354

def orientation
  @orientation
end

354
355
356

# File 'lib/bio/io/das.rb', line 354

def start
  @start
end

354
355
356

# File 'lib/bio/io/das.rb', line 354

def stop
  @stop
end

354
355
356

# File 'lib/bio/io/das.rb', line 354

def subparts
  @subparts
end

354
355
356

# File 'lib/bio/io/das.rb', line 354

def types
  @types
end

354
355
356

# File 'lib/bio/io/das.rb', line 354

def version
  @version
end

342
343
344
345
346
347
348

# File 'lib/bio/io/das.rb', line 342

def self.region(entry_id, start, stop)
  segment = self.new
  segment.entry_id = entry_id
  segment.start = start
  segment.stop = stop
  return segment
end