Class: MartSearch::Server

Inherits:

Sinatra::Base

• Object
• Sinatra::Base
• MartSearch::Server

show all

Includes:

ProjectUtils, ServerUtils

Defined in:

lib/martsearch/server.rb

Overview

Constant Summary

VERSION =

We're going to use the version number as a cache breaker for the CSS and javascript code. Update with each release of your portal (especially if you change the CSS or JS)!!!

'0.1.27'

DEFAULT_CSS_FILES =

[
  'reset.css',
  'jquery.prettyPhoto.css',
  'jquery.tablesorter.css',
  'jquery.fontresize.css',
  'jquery-ui-1.8.9.redmond.css',
  'jquery.qtip.css',
  'screen.css'
]

DEFAULT_HEAD_JS_FILES =

[
  'jquery-1.4.4.min.js',
  'martsearch-head.js'
]

DEFAULT_BASE_JS_FILES =

[
  'jquery.prettyPhoto.js',
  'jquery.tablesorter.js',
  'jquery.cookie.js',
  'jquery.fontResize.js',
  'jquery.scrollTo-1.4.2.js',
  'jquery.jstree.js',
  'jquery.qtip.js',
  'jquery-ui-1.8.9.min.js',
  'modernizr-1.6.min.js',
  'martsearch-base.js'
]

Instance Method Summary (collapse)

• - (Object) dv

  Load in any custom (per dataset) routes.

• - (Object) get_project_page_data(project_id, params)
• - (Server) initialize constructor

  A new instance of Server.

• - (Object) options

  hack/monkey-patch whatever stop with your 'Sinatra::Base#options is deprecated and will be removed, use #settings instead.'.

• - (Object) path

  IKMC Project Reports.

Methods included from ProjectUtils

#get_ikmc_project_page_data

Methods included from ServerViewHelpers

#content_tag, #partial, #url_for

Methods included from MartSearch::ServerViewHelpers::OrderButtons

#emma_mouse_order_button, #escell_order_button, #mouse_order_button, #vector_order_button

Methods included from MartSearch::ServerViewHelpers::MiscDbLinks

#emma_link_url, #htgt_design_url, #interpro_link_url

Methods included from MartSearch::ServerViewHelpers::GbrowseLinks

#mgi_gbrowse_img

Methods included from MartSearch::ServerViewHelpers::UcscLinks

#ucsc_link_url

Methods included from MartSearch::ServerViewHelpers::EnsemblLinks

#ensembl_link_url_from_coords, #ensembl_link_url_from_exon, #ensembl_link_url_from_gene, #ensembl_link_url_from_transcript, #vega_link_url_from_exon, #vega_link_url_from_gene

Methods included from DataSetUtils

#allele_type, #fix_superscript_text_in_attribute

Methods included from Utils

#build_http_client, #convert_array_to_hash

Methods included from ServerUtils

#compressed_base_js, #compressed_css, #compressed_head_js

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# File 'lib/martsearch/server.rb', line 67

def initialize
  @ms          = MartSearch::Controller.instance()
  @config      = @ms.config[:server]
  @portal_name = @config[:portal_name]

  super
end

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# File 'lib/martsearch/server.rb', line 359

MartSearch::Controller.instance().dataviews.each do |dv|
  if dv.use_custom_routes?
    load "#{MARTSEARCH_PATH}/config/server/dataviews/#{dv.internal_name}/routes.rb"
  end
end

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# File 'lib/martsearch/server.rb', line 294

def get_project_page_data( project_id, params )
  @ms.logger.debug("[MartSearch::Server] ::get_project_page_data - running get_project_page_data( '#{project_id}', '#{params}' )")
  @data = @ms.fetch_from_cache("project-report-#{project_id}")
  if @data.nil? or params[:fresh] == "true"
    results = get_ikmc_project_page_data( project_id )
    @data   = results[:data]
    @errors = { :project_page_errors => results[:errors] }

    unless @data.nil?
      @ms.write_to_cache( "project-report-#{project_id}", @data )
    end
  end
  @ms.logger.debug("[MartSearch::Server] ::get_project_page_data - running get_project_page_data( '#{project_id}', '#{params}' ) - DONE")
end

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# File 'lib/martsearch/server.rb', line 27

def options; settings; end

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# File 'lib/martsearch/server.rb', line 248

['/project/:id','/project/?'].each do |path|
  get path do
    project_id = params[:id]
    redirect "#{request.script_name}/" if project_id.nil?

    @current    = "home"
    @page_title = "IKMC Project: #{project_id}"

    @ms.logger.debug("[MartSearch::Server] /project/#{params[:id]} - running get_project_page_data")
    get_project_page_data( project_id, params )
    @ms.logger.debug("[MartSearch::Server] /project/#{params[:id]} - running get_project_page_data - DONE")

    if @data.nil?
      status 404
      erb :not_found
    else
      if params[:wt] == 'json'
        @ms.logger.debug("[MartSearch::Server] /project/#{params[:id]} - rendering JSON")
        content_type 'application/json', :charset => 'utf-8'
        return JSON.generate( @data, :max_nesting => false )
      else
        @ms.logger.debug("[MartSearch::Server] /project/#{params[:id]} - rendering templates")
        erb :project_report
      end
    end
  end
end