Class: Bio::Blast::Bl2seq::Report::HSP

Inherits:
Default::Report::HSP show all
Defined in:
lib/bio/appl/bl2seq/report.rb

Overview

Bio::Bl2seq::Report::HSP holds information about the hsp (high-scoring segment pair). NOTE that the HSP class below is NOT used because Ruby’s constants namespace are normally statically determined and HSP object is created in Bio::Blast::Default::Report::Hit class. Please refer to Bio::Blast::Default::Report::HSP.

Instance Attribute Summary

Attributes inherited from Default::Report::HSP

#align_len, #bit_score, #evalue, #gaps, #hit_frame, #hit_from, #hit_strand, #hit_to, #hseq, #identity, #midline, #percent_gaps, #percent_identity, #percent_positive, #positive, #qseq, #query_frame, #query_from, #query_strand, #query_to, #score, #stat_method

Method Summary

Methods inherited from Default::Report::HSP

#initialize

Constructor Details

This class inherits a constructor from Bio::Blast::Default::Report::HSP