Class: Bio::Blast::Report_tab

Inherits:
Report show all
Defined in:
lib/bio/appl/blast/report.rb

Overview

NCBI BLAST tabular (-m 8) output parser. All methods are equal to Bio::Blast::Report. Only DELIMITER (and RS) is different.

Constant Summary collapse

DELIMITER =

Delimter of each entry. Bio::FlatFile uses it.

RS = nil

Instance Attribute Summary

Attributes inherited from Report

#db, #iterations, #parameters, #program, #query_def, #query_id, #query_len, #reference, #reports, #version

Method Summary

Methods inherited from Report

#db_len, #db_num, #each_hit, #each_iteration, #eff_space, #entrez_query, #entropy, #expect, #filter, #gap_extend, #gap_open, #hits, #hsp_len, #inclusion, #initialize, #kappa, #lambda, #matrix, #message, #pattern, rexml, #sc_match, #sc_mismatch, #statistics, tab, xmlparser

Constructor Details

This class inherits a constructor from Bio::Blast::Report