Class: Bio::Alignment::FactoryTemplate::FileInStdoutOut

Inherits:
Simple
  • Object
show all
Includes:
WrapInputTempfile, WrapOutputStdout
Defined in:
lib/bio/alignment.rb

Overview

Template class for alignment application factory. The program needs: input: file (cannot accept stdin), format = fasta format output: stdout (parser should be specified by DEFAULT_PARSER)

Direct Known Subclasses

Probcons

Instance Attribute Summary

Attributes inherited from Simple

#command, #data_stdout, #exit_status, #options, #output, #program, #report

Method Summary

Methods inherited from Simple

#initialize, #query, #query_align, #query_alignment, #query_by_filename, #query_string, #reset

Constructor Details

This class inherits a constructor from Bio::Alignment::FactoryTemplate::Simple