Class: Bio::TrEMBL
Overview
Description
Parser class for TrEMBL database entry. See also Bio::SPTR class. This class holds name space for TrEMBL specific methods.
UniProtKB/SwissProt specific methods are defined in this class. Shared methods for UniProtKB/SwissProt and TrEMBL classes are defined in Bio::SPTR class.
Examples
str = File.read("Q2UNG2_ASPOR.trembl")
obj = Bio::TrEMBL.new(str)
obj.entry_id #=> "Q2UNG2_ASPOR"
Referencees
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TrEMBL Computer-annotated supplement to Swiss-Prot au.expasy.org/sprot/
-
TrEMBL Computer-annotated supplement to Swiss-Prot User Manual au.expasy.org/sprot/userman.html
Constant Summary
Constants included from EMBLDB::Common
EMBLDB::Common::DELIMITER, EMBLDB::Common::RS, EMBLDB::Common::TAGSIZE
Method Summary
Methods inherited from SPTR
#cc, #dr, #dt, #embl_dr, #entry_id, #ft, #gene_name, #gene_names, #gn, #hi, #id_line, #molecule, #oh, #os, #ox, #protein_name, #ref, #references, #seq, #sequence_length, #set_RN, #sq, #synonyms
Methods included from EMBLDB::Common
#ac, #accession, #de, #dr, #initialize, #kw, #oc, #og, #os, #ref, #references