Ensembl

Gem to access ensembl.org database. Currently only supports Variation database tables and latest version.

Some of the work is inspired of ruby-ensembl-api project.

Installation

Add this line to your application's Gemfile:

gem 'ensembl'

And then execute:

$ bundle

Or install it yourself as:

$ gem install ensembl

Usage

require 'ensembl'

ENSEMBL.ORG database - Default configuration

Ensembl::Variation::Variation.first

Ensembl::Variation::Variation.first.source

Custom database

# Set following values before using - Only Human databases is somewhat tested.

Ensembl.host = 'myhost.example.com'
Ensembl.port = 3306                                 # default
Ensembl.username = 'anonymous'                      # default
Ensembl.password = ''                               # default
Ensembl.species = 'homo_sapiens'                    # default
Ensembl.version = 75                                # default
Ensembl.hg_version = 37                             # default

Contributing

1. Fork it ( https://github.com/kmetsalu/ensembl/fork )
2. Create your feature branch (git checkout -b my-new-feature)
3. Commit your changes (git commit -am 'Add some feature')
4. Push to the branch (git push origin my-new-feature)
5. Create a new Pull Request