Method: Bio::Sim4#query

Defined in:
lib/bio/appl/sim4.rb

#query(seq1) ⇒ Object

Executes the sim4 program. seq1 shall be a Bio::Sequence object. Returns a Bio::Sim4::Report object.



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# File 'lib/bio/appl/sim4.rb', line 79

def query(seq1)
  tf = Tempfile.open('sim4')
  tf.print seq1.to_fasta('seq1', 70)
  tf.close(false)
  r = exec_local(tf.path)
  tf.close(true)
  r
end