Qu::Cmdwrapper

qu-cmdwrapper: A wrapper for command-line tools, mostly are bioinformatics related tools

Installation

Add this line to your application's Gemfile:

gem 'qu-cmdwrapper'

And then execute:

$ bundle

Or install it yourself as:

$ gem install qu-cmdwrapper

Usage

# retrieve sequence from two bit formated database with twoBitToFa command
amp_seq_list = Cmdwrapper::twoBitToFa(fh.path, db + Qu::Mfeindex::DB_2BIT)

Contributing

1. Fork it
2. Create your feature branch (git checkout -b my-new-feature)
3. Commit your changes (git commit -am 'Add some feature')
4. Push to the branch (git push origin my-new-feature)
5. Create new Pull Request