Class: TaxonNameRelationship::Iczn::Invalidating
Defined Under Namespace
Classes: Homonym, Misapplication, Synonym, Usage
Constant Summary
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- NOMEN_URI =
'http://purl.obolibrary.org/obo/NOMEN_0000272'.freeze
SoftValidation::ANCESTORS_WITH_SOFT_VALIDATIONS
Instance Attribute Summary
#no_cached, #object_taxon_name_id, #project_id, #subject_taxon_name_id, #type
Class Method Summary
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Instance Method Summary
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#sv_validate_priority, valid_object_ranks, valid_subject_ranks
collect_descendants_and_itself_to_s, collect_descendants_to_s, collect_to_s, gbif_status_of_object, #is_combination?, #is_invalidating?, nomen_uri, #nomenclature_date, #object_properties, #object_status_tag, parent, required_taxon_name_relationships, #set_cached_names_for_taxon_names, #subject_and_object_in_same_project, #subject_invalid_statuses, #subject_status_tag, #sv_coordinated_taxa, #sv_coordinated_taxa_object, #sv_fix_combination_relationship, #sv_fix_coordinated_object_taxa, #sv_fix_coordinated_subject_taxa, #sv_fix_not_specific_relationship, #sv_fix_objective_synonym_relationship, #sv_fix_subject_parent_update, #sv_objective_synonym_relationship, #sv_specific_relationship, #sv_synonym_linked_to_valid_name, #sv_validate_disjoint_object, #sv_validate_disjoint_relationships, #sv_validate_disjoint_subject, #sv_validate_priority, #sv_validate_required_relationships, #sv_validate_seniority, #type_class, #type_class=, #type_name, valid_object_ranks, valid_subject_ranks, #validate_object_and_subject_both_protonyms, #validate_object_must_equal_subject_for_uncertain_placement, #validate_rank_group, #validate_subject_and_object_are_not_identical, #validate_subject_and_object_ranks, #validate_subject_and_object_share_code, #validate_type, #validate_uniqueness_of_typification_object
#clear_soft_validations, #fix_for, #fix_soft_validations, #soft_fixed?, #soft_valid?, #soft_validate, #soft_validated?, #soft_validations, #soft_validators
#errors_excepting, #full_error_messages_excepting, #identical, #is_community?, #is_destroyable?, #is_editable?, #is_in_use?, #is_in_users_projects?, #metamorphosize, #similar
#concatenated_notes_string, #reject_notes
#cited?, #mark_citations_for_destruction, #nomenclature_date, #origin_citation_source_id, #reject_citations, #requires_citation?, #sources_by_topic_id
#has_polymorphic_relationship?
transaction_with_retry
Class Method Details
.assignable ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 24
def self.assignable
true
end
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.assignment_method ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 56
def self.assignment_method
:iczn_set_as_invalid_of
end
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.disjoint_object_classes ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 16
def self.disjoint_object_classes
ICN_TAXON_NAME_CLASSIFICATION_NAMES + ICNP_TAXON_NAME_CLASSIFICATION_NAMES + ICVCN_TAXON_NAME_CLASSIFICATION_NAMES
end
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.disjoint_subject_classes ⇒ Object
.disjoint_taxon_name_relationships ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 5
def self.disjoint_taxon_name_relationships
self.parent.disjoint_taxon_name_relationships +
self.collect_descendants_and_itself_to_s(TaxonNameRelationship::Iczn::Validating)
end
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.gbif_status_of_subject ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 50
def self.gbif_status_of_subject
'invalidum'
end
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.inverse_assignment_method ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 61
def self.inverse_assignment_method
:iczn_invalid
end
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.nomenclatural_priority ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 20
def self.nomenclatural_priority
:direct
end
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Instance Method Details
#object_status ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 37
def object_status
'valid'
end
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#object_status_connector_to_subject ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 45
def object_status_connector_to_subject
' for'
end
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#similar_homonym_string ⇒ Boolean
Returns See use in Protonym.becomes_combination. It does not make sense to run this on all relationships.
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# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 68
def similar_homonym_string
a = subject_taxon_name
b = object_taxon_name
if a.is_species_rank? && a.cached_secondary_homonym_alternative_spelling.nil? && a.cached_valid_taxon_name_id == b.cached_valid_taxon_name_id
return true if a.name == b.name
elsif a.is_species_rank?
return true if a.cached_secondary_homonym_alternative_spelling && (a.cached_secondary_homonym_alternative_spelling == b.cached_secondary_homonym_alternative_spelling)
elsif a.is_genus_rank?
return true if a.cached_primary_homonym_alternative_spelling && (a.cached_primary_homonym_alternative_spelling == b.cached_primary_homonym_alternative_spelling)
else
return false
end
false
end
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#subject_properties ⇒ Object
#subject_status ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 33
def subject_status
'unavailable or invalid'
end
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#subject_status_connector_to_object ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 41
def subject_status_connector_to_object
', linked to'
end
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#sv_not_specific_relationship ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 83
def sv_not_specific_relationship
if self.subject_taxon_name.is_available?
soft_validations.add(:type, 'Please specify the reason for the name being Invalid')
end
end
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#sv_synonym_relationship ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 89
def sv_synonym_relationship
unless self.source
soft_validations.add(:base, 'The original publication is not selected')
end
end
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