Module: Map::Coordinate

Defined in:
app/models/map.rb

Constant Summary collapse

PLATE_DIMENSIONS =

TODO: These methods are only valid for standard plates. Moved them here to make that more explicit (even if its not strictly appropriate) They could do with refactoring/removing.

Hash.new { |_h, _k| [] }.merge(
  96 => [12, 8],
  384 => [24, 16]
)

Instance Attribute Summary collapse

Class Method Summary collapse

Instance Attribute Details

#asset_sizeInteger

Returns the plate size for which the Map corresponds

Returns:

  • (Integer)

    the plate size for which the Map corresponds


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# File 'app/models/map.rb', line 16

module Coordinate
  # TODO: These methods are only valid for standard plates. Moved them here to make that more explicit
  # (even if its not strictly appropriate) They could do with refactoring/removing.

  PLATE_DIMENSIONS = Hash.new { |_h, _k| [] }.merge(
    96 => [12, 8],
    384 => [24, 16]
  )

  def self.location_from_row_and_column(row, column, _ = nil, __ = nil)
    "#{(?A.getbyte(0) + row).chr}#{column}"
  end

  def self.description_to_horizontal_plate_position(well_description, plate_size)
    return nil unless Map.valid_well_description_and_plate_size?(well_description, plate_size)

    split_well = Map.split_well_description(well_description)
    width = plate_width(plate_size)
    return nil if width.nil?

    (width * split_well[:row]) + split_well[:col]
  end

  def self.description_to_vertical_plate_position(well_description, plate_size)
    return nil unless Map.valid_well_description_and_plate_size?(well_description, plate_size)

    split_well = Map.split_well_description(well_description)
    length = plate_length(plate_size)
    return nil if length.nil?

    (length * (split_well[:col] - 1)) + split_well[:row] + 1
  end

  def self.horizontal_plate_position_to_description(well_position, plate_size)
    return nil unless Map.valid_plate_position_and_plate_size?(well_position, plate_size)

    width = plate_width(plate_size)
    return nil if width.nil?

    horizontal_position_to_description(well_position, width)
  end

  def self.vertical_plate_position_to_description(well_position, plate_size)
    return nil unless Map.valid_plate_position_and_plate_size?(well_position, plate_size)

    length = plate_length(plate_size)
    return nil if length.nil?

    vertical_position_to_description(well_position, length)
  end

  def self.descriptions_for_row(row, size)
    (1..plate_width(size)).map { |column| "#{row}#{column}" }
  end

  def self.descriptions_for_column(column, size)
    (0...plate_length(size)).map { |row| Map.location_from_row_and_column(row, column) }
  end

  def self.plate_width(plate_size)
    PLATE_DIMENSIONS[plate_size].first
  end

  def self.plate_length(plate_size)
    PLATE_DIMENSIONS[plate_size].last
  end

  def self.vertical_position_to_description(well_position, length)
    desc_letter = (((well_position - 1) % length) + 65).chr
    desc_number = ((well_position - 1) / length) + 1
    (desc_letter + (desc_number.to_s))
  end

  def self.horizontal_position_to_description(well_position, width)
    desc_letter = (((well_position - 1) / width) + 65).chr
    desc_number = ((well_position - 1) % width) + 1
    (desc_letter + (desc_number.to_s))
  end

  def self.horizontal_to_vertical(well_position, plate_size)
    alternate_position(well_position, plate_size, :width, :length)
  end

  def self.vertical_to_horizontal(well_position, plate_size)
    alternate_position(well_position, plate_size, :length, :width)
  end

  def self.location_from_index(index, size)
    horizontal_plate_position_to_description(index + 1, size)
  end

  class << self
    # Given the well position described in terms of a direction (vertical or horizontal) this function
    # will map it to the alternate positional representation, i.e. a vertical position will be mapped
    # to a horizontal one.  It does this with the divisor and multiplier, which will be reversed for
    # the alternate.
    #
    # NOTE: I don't like this, it just makes things clearer than it was!
    # NOTE: I hate the nil returns but external code would take too long to change this time round
    def alternate_position(well_position, size, *dimensions)
      return nil unless Map.valid_well_position?(well_position)

      divisor, multiplier = dimensions.map { |n| send("plate_#{n}", size) }
      return nil if divisor.nil? or multiplier.nil?

      column, row = (well_position - 1).divmod(divisor)
      return nil unless (0...multiplier).cover?(column)
      return nil unless (0...divisor).cover?(row)

      (row * multiplier) + column + 1
    end
    private :alternate_position
  end
end

#column_orderInteger

Returns zero indexed order of the well when sorted by column

Returns:

  • (Integer)

    zero indexed order of the well when sorted by column


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# File 'app/models/map.rb', line 16

module Coordinate
  # TODO: These methods are only valid for standard plates. Moved them here to make that more explicit
  # (even if its not strictly appropriate) They could do with refactoring/removing.

  PLATE_DIMENSIONS = Hash.new { |_h, _k| [] }.merge(
    96 => [12, 8],
    384 => [24, 16]
  )

  def self.location_from_row_and_column(row, column, _ = nil, __ = nil)
    "#{(?A.getbyte(0) + row).chr}#{column}"
  end

  def self.description_to_horizontal_plate_position(well_description, plate_size)
    return nil unless Map.valid_well_description_and_plate_size?(well_description, plate_size)

    split_well = Map.split_well_description(well_description)
    width = plate_width(plate_size)
    return nil if width.nil?

    (width * split_well[:row]) + split_well[:col]
  end

  def self.description_to_vertical_plate_position(well_description, plate_size)
    return nil unless Map.valid_well_description_and_plate_size?(well_description, plate_size)

    split_well = Map.split_well_description(well_description)
    length = plate_length(plate_size)
    return nil if length.nil?

    (length * (split_well[:col] - 1)) + split_well[:row] + 1
  end

  def self.horizontal_plate_position_to_description(well_position, plate_size)
    return nil unless Map.valid_plate_position_and_plate_size?(well_position, plate_size)

    width = plate_width(plate_size)
    return nil if width.nil?

    horizontal_position_to_description(well_position, width)
  end

  def self.vertical_plate_position_to_description(well_position, plate_size)
    return nil unless Map.valid_plate_position_and_plate_size?(well_position, plate_size)

    length = plate_length(plate_size)
    return nil if length.nil?

    vertical_position_to_description(well_position, length)
  end

  def self.descriptions_for_row(row, size)
    (1..plate_width(size)).map { |column| "#{row}#{column}" }
  end

  def self.descriptions_for_column(column, size)
    (0...plate_length(size)).map { |row| Map.location_from_row_and_column(row, column) }
  end

  def self.plate_width(plate_size)
    PLATE_DIMENSIONS[plate_size].first
  end

  def self.plate_length(plate_size)
    PLATE_DIMENSIONS[plate_size].last
  end

  def self.vertical_position_to_description(well_position, length)
    desc_letter = (((well_position - 1) % length) + 65).chr
    desc_number = ((well_position - 1) / length) + 1
    (desc_letter + (desc_number.to_s))
  end

  def self.horizontal_position_to_description(well_position, width)
    desc_letter = (((well_position - 1) / width) + 65).chr
    desc_number = ((well_position - 1) % width) + 1
    (desc_letter + (desc_number.to_s))
  end

  def self.horizontal_to_vertical(well_position, plate_size)
    alternate_position(well_position, plate_size, :width, :length)
  end

  def self.vertical_to_horizontal(well_position, plate_size)
    alternate_position(well_position, plate_size, :length, :width)
  end

  def self.location_from_index(index, size)
    horizontal_plate_position_to_description(index + 1, size)
  end

  class << self
    # Given the well position described in terms of a direction (vertical or horizontal) this function
    # will map it to the alternate positional representation, i.e. a vertical position will be mapped
    # to a horizontal one.  It does this with the divisor and multiplier, which will be reversed for
    # the alternate.
    #
    # NOTE: I don't like this, it just makes things clearer than it was!
    # NOTE: I hate the nil returns but external code would take too long to change this time round
    def alternate_position(well_position, size, *dimensions)
      return nil unless Map.valid_well_position?(well_position)

      divisor, multiplier = dimensions.map { |n| send("plate_#{n}", size) }
      return nil if divisor.nil? or multiplier.nil?

      column, row = (well_position - 1).divmod(divisor)
      return nil unless (0...multiplier).cover?(column)
      return nil unless (0...divisor).cover?(row)

      (row * multiplier) + column + 1
    end
    private :alternate_position
  end
end

#descriptionString

Returns the name of the well. In most cases this will be in the along the lines of A1 or H12

Returns:

  • (String)

    the name of the well. In most cases this will be in the along the lines of A1 or H12


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# File 'app/models/map.rb', line 16

module Coordinate
  # TODO: These methods are only valid for standard plates. Moved them here to make that more explicit
  # (even if its not strictly appropriate) They could do with refactoring/removing.

  PLATE_DIMENSIONS = Hash.new { |_h, _k| [] }.merge(
    96 => [12, 8],
    384 => [24, 16]
  )

  def self.location_from_row_and_column(row, column, _ = nil, __ = nil)
    "#{(?A.getbyte(0) + row).chr}#{column}"
  end

  def self.description_to_horizontal_plate_position(well_description, plate_size)
    return nil unless Map.valid_well_description_and_plate_size?(well_description, plate_size)

    split_well = Map.split_well_description(well_description)
    width = plate_width(plate_size)
    return nil if width.nil?

    (width * split_well[:row]) + split_well[:col]
  end

  def self.description_to_vertical_plate_position(well_description, plate_size)
    return nil unless Map.valid_well_description_and_plate_size?(well_description, plate_size)

    split_well = Map.split_well_description(well_description)
    length = plate_length(plate_size)
    return nil if length.nil?

    (length * (split_well[:col] - 1)) + split_well[:row] + 1
  end

  def self.horizontal_plate_position_to_description(well_position, plate_size)
    return nil unless Map.valid_plate_position_and_plate_size?(well_position, plate_size)

    width = plate_width(plate_size)
    return nil if width.nil?

    horizontal_position_to_description(well_position, width)
  end

  def self.vertical_plate_position_to_description(well_position, plate_size)
    return nil unless Map.valid_plate_position_and_plate_size?(well_position, plate_size)

    length = plate_length(plate_size)
    return nil if length.nil?

    vertical_position_to_description(well_position, length)
  end

  def self.descriptions_for_row(row, size)
    (1..plate_width(size)).map { |column| "#{row}#{column}" }
  end

  def self.descriptions_for_column(column, size)
    (0...plate_length(size)).map { |row| Map.location_from_row_and_column(row, column) }
  end

  def self.plate_width(plate_size)
    PLATE_DIMENSIONS[plate_size].first
  end

  def self.plate_length(plate_size)
    PLATE_DIMENSIONS[plate_size].last
  end

  def self.vertical_position_to_description(well_position, length)
    desc_letter = (((well_position - 1) % length) + 65).chr
    desc_number = ((well_position - 1) / length) + 1
    (desc_letter + (desc_number.to_s))
  end

  def self.horizontal_position_to_description(well_position, width)
    desc_letter = (((well_position - 1) / width) + 65).chr
    desc_number = ((well_position - 1) % width) + 1
    (desc_letter + (desc_number.to_s))
  end

  def self.horizontal_to_vertical(well_position, plate_size)
    alternate_position(well_position, plate_size, :width, :length)
  end

  def self.vertical_to_horizontal(well_position, plate_size)
    alternate_position(well_position, plate_size, :length, :width)
  end

  def self.location_from_index(index, size)
    horizontal_plate_position_to_description(index + 1, size)
  end

  class << self
    # Given the well position described in terms of a direction (vertical or horizontal) this function
    # will map it to the alternate positional representation, i.e. a vertical position will be mapped
    # to a horizontal one.  It does this with the divisor and multiplier, which will be reversed for
    # the alternate.
    #
    # NOTE: I don't like this, it just makes things clearer than it was!
    # NOTE: I hate the nil returns but external code would take too long to change this time round
    def alternate_position(well_position, size, *dimensions)
      return nil unless Map.valid_well_position?(well_position)

      divisor, multiplier = dimensions.map { |n| send("plate_#{n}", size) }
      return nil if divisor.nil? or multiplier.nil?

      column, row = (well_position - 1).divmod(divisor)
      return nil unless (0...multiplier).cover?(column)
      return nil unless (0...divisor).cover?(row)

      (row * multiplier) + column + 1
    end
    private :alternate_position
  end
end

#row_orderInteger

Returns zero indexed order of the well when sorted by row

Returns:

  • (Integer)

    zero indexed order of the well when sorted by row


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# File 'app/models/map.rb', line 16

module Coordinate
  # TODO: These methods are only valid for standard plates. Moved them here to make that more explicit
  # (even if its not strictly appropriate) They could do with refactoring/removing.

  PLATE_DIMENSIONS = Hash.new { |_h, _k| [] }.merge(
    96 => [12, 8],
    384 => [24, 16]
  )

  def self.location_from_row_and_column(row, column, _ = nil, __ = nil)
    "#{(?A.getbyte(0) + row).chr}#{column}"
  end

  def self.description_to_horizontal_plate_position(well_description, plate_size)
    return nil unless Map.valid_well_description_and_plate_size?(well_description, plate_size)

    split_well = Map.split_well_description(well_description)
    width = plate_width(plate_size)
    return nil if width.nil?

    (width * split_well[:row]) + split_well[:col]
  end

  def self.description_to_vertical_plate_position(well_description, plate_size)
    return nil unless Map.valid_well_description_and_plate_size?(well_description, plate_size)

    split_well = Map.split_well_description(well_description)
    length = plate_length(plate_size)
    return nil if length.nil?

    (length * (split_well[:col] - 1)) + split_well[:row] + 1
  end

  def self.horizontal_plate_position_to_description(well_position, plate_size)
    return nil unless Map.valid_plate_position_and_plate_size?(well_position, plate_size)

    width = plate_width(plate_size)
    return nil if width.nil?

    horizontal_position_to_description(well_position, width)
  end

  def self.vertical_plate_position_to_description(well_position, plate_size)
    return nil unless Map.valid_plate_position_and_plate_size?(well_position, plate_size)

    length = plate_length(plate_size)
    return nil if length.nil?

    vertical_position_to_description(well_position, length)
  end

  def self.descriptions_for_row(row, size)
    (1..plate_width(size)).map { |column| "#{row}#{column}" }
  end

  def self.descriptions_for_column(column, size)
    (0...plate_length(size)).map { |row| Map.location_from_row_and_column(row, column) }
  end

  def self.plate_width(plate_size)
    PLATE_DIMENSIONS[plate_size].first
  end

  def self.plate_length(plate_size)
    PLATE_DIMENSIONS[plate_size].last
  end

  def self.vertical_position_to_description(well_position, length)
    desc_letter = (((well_position - 1) % length) + 65).chr
    desc_number = ((well_position - 1) / length) + 1
    (desc_letter + (desc_number.to_s))
  end

  def self.horizontal_position_to_description(well_position, width)
    desc_letter = (((well_position - 1) / width) + 65).chr
    desc_number = ((well_position - 1) % width) + 1
    (desc_letter + (desc_number.to_s))
  end

  def self.horizontal_to_vertical(well_position, plate_size)
    alternate_position(well_position, plate_size, :width, :length)
  end

  def self.vertical_to_horizontal(well_position, plate_size)
    alternate_position(well_position, plate_size, :length, :width)
  end

  def self.location_from_index(index, size)
    horizontal_plate_position_to_description(index + 1, size)
  end

  class << self
    # Given the well position described in terms of a direction (vertical or horizontal) this function
    # will map it to the alternate positional representation, i.e. a vertical position will be mapped
    # to a horizontal one.  It does this with the divisor and multiplier, which will be reversed for
    # the alternate.
    #
    # NOTE: I don't like this, it just makes things clearer than it was!
    # NOTE: I hate the nil returns but external code would take too long to change this time round
    def alternate_position(well_position, size, *dimensions)
      return nil unless Map.valid_well_position?(well_position)

      divisor, multiplier = dimensions.map { |n| send("plate_#{n}", size) }
      return nil if divisor.nil? or multiplier.nil?

      column, row = (well_position - 1).divmod(divisor)
      return nil unless (0...multiplier).cover?(column)
      return nil unless (0...divisor).cover?(row)

      (row * multiplier) + column + 1
    end
    private :alternate_position
  end
end

Class Method Details

.alternate_position(well_position, size, *dimensions) ⇒ Object

Given the well position described in terms of a direction (vertical or horizontal) this function will map it to the alternate positional representation, i.e. a vertical position will be mapped to a horizontal one. It does this with the divisor and multiplier, which will be reversed for the alternate.

NOTE: I don't like this, it just makes things clearer than it was! NOTE: I hate the nil returns but external code would take too long to change this time round


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# File 'app/models/map.rb', line 115

def alternate_position(well_position, size, *dimensions)
  return nil unless Map.valid_well_position?(well_position)

  divisor, multiplier = dimensions.map { |n| send("plate_#{n}", size) }
  return nil if divisor.nil? or multiplier.nil?

  column, row = (well_position - 1).divmod(divisor)
  return nil unless (0...multiplier).cover?(column)
  return nil unless (0...divisor).cover?(row)

  (row * multiplier) + column + 1
end

.description_to_horizontal_plate_position(well_description, plate_size) ⇒ Object


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# File 'app/models/map.rb', line 29

def self.description_to_horizontal_plate_position(well_description, plate_size)
  return nil unless Map.valid_well_description_and_plate_size?(well_description, plate_size)

  split_well = Map.split_well_description(well_description)
  width = plate_width(plate_size)
  return nil if width.nil?

  (width * split_well[:row]) + split_well[:col]
end

.description_to_vertical_plate_position(well_description, plate_size) ⇒ Object


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# File 'app/models/map.rb', line 39

def self.description_to_vertical_plate_position(well_description, plate_size)
  return nil unless Map.valid_well_description_and_plate_size?(well_description, plate_size)

  split_well = Map.split_well_description(well_description)
  length = plate_length(plate_size)
  return nil if length.nil?

  (length * (split_well[:col] - 1)) + split_well[:row] + 1
end

.descriptions_for_column(column, size) ⇒ Object


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# File 'app/models/map.rb', line 71

def self.descriptions_for_column(column, size)
  (0...plate_length(size)).map { |row| Map.location_from_row_and_column(row, column) }
end

.descriptions_for_row(row, size) ⇒ Object


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# File 'app/models/map.rb', line 67

def self.descriptions_for_row(row, size)
  (1..plate_width(size)).map { |column| "#{row}#{column}" }
end

.horizontal_plate_position_to_description(well_position, plate_size) ⇒ Object


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# File 'app/models/map.rb', line 49

def self.horizontal_plate_position_to_description(well_position, plate_size)
  return nil unless Map.valid_plate_position_and_plate_size?(well_position, plate_size)

  width = plate_width(plate_size)
  return nil if width.nil?

  horizontal_position_to_description(well_position, width)
end

.horizontal_position_to_description(well_position, width) ⇒ Object


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# File 'app/models/map.rb', line 89

def self.horizontal_position_to_description(well_position, width)
  desc_letter = (((well_position - 1) / width) + 65).chr
  desc_number = ((well_position - 1) % width) + 1
  (desc_letter + (desc_number.to_s))
end

.horizontal_to_vertical(well_position, plate_size) ⇒ Object


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# File 'app/models/map.rb', line 95

def self.horizontal_to_vertical(well_position, plate_size)
  alternate_position(well_position, plate_size, :width, :length)
end

.location_from_index(index, size) ⇒ Object


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# File 'app/models/map.rb', line 103

def self.location_from_index(index, size)
  horizontal_plate_position_to_description(index + 1, size)
end

.location_from_row_and_column(row, column, _ = nil, __ = nil) ⇒ Object


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# File 'app/models/map.rb', line 25

def self.location_from_row_and_column(row, column, _ = nil, __ = nil)
  "#{(?A.getbyte(0) + row).chr}#{column}"
end

.plate_length(plate_size) ⇒ Object


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# File 'app/models/map.rb', line 79

def self.plate_length(plate_size)
  PLATE_DIMENSIONS[plate_size].last
end

.plate_width(plate_size) ⇒ Object


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# File 'app/models/map.rb', line 75

def self.plate_width(plate_size)
  PLATE_DIMENSIONS[plate_size].first
end

.vertical_plate_position_to_description(well_position, plate_size) ⇒ Object


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# File 'app/models/map.rb', line 58

def self.vertical_plate_position_to_description(well_position, plate_size)
  return nil unless Map.valid_plate_position_and_plate_size?(well_position, plate_size)

  length = plate_length(plate_size)
  return nil if length.nil?

  vertical_position_to_description(well_position, length)
end

.vertical_position_to_description(well_position, length) ⇒ Object


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# File 'app/models/map.rb', line 83

def self.vertical_position_to_description(well_position, length)
  desc_letter = (((well_position - 1) % length) + 65).chr
  desc_number = ((well_position - 1) / length) + 1
  (desc_letter + (desc_number.to_s))
end

.vertical_to_horizontal(well_position, plate_size) ⇒ Object


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# File 'app/models/map.rb', line 99

def self.vertical_to_horizontal(well_position, plate_size)
  alternate_position(well_position, plate_size, :length, :width)
end