Class: IlluminaHtp::Requests::GbsRequest

Inherits:
StdLibraryRequest show all
Includes:
Request::HasPrimerPanel
Defined in:
app/models/illumina_htp/requests/gbs_request.rb

Overview

Class GbsRequest provides a means of tracking Genotype by Sequencing requests

Author:

  • Genome Research Ltd.

Constant Summary

Constants included from Metadata

Metadata::SECTION_FIELDS

Constants included from Request::Statemachine

Request::Statemachine::ACTIVE, Request::Statemachine::COMPLETED_STATE, Request::Statemachine::INACTIVE, Request::Statemachine::OPENED_STATE, Request::Statemachine::SORT_ORDER

Constants included from StandardNamedScopes

StandardNamedScopes::SORT_FIELDS, StandardNamedScopes::SORT_ORDERS

Instance Method Summary collapse

Methods included from Request::HasPrimerPanel

#update_pool_information

Methods inherited from StdLibraryRequest

#on_failed, #update_pool_information, #valid_purpose?

Methods inherited from Request::LibraryCreation

fragment_size_details, #on_started, #update_pool_information

Methods included from Request::CustomerResponsibility

included

Methods inherited from CustomerRequest

#customer_accepts_responsibility!, #generate_create_request_event, #generate_destroy_request_event, #generate_request_event, #update_responsibilities!

Methods inherited from Request

accessioning_required?, #add_comment, #associated_studies, #cancelable?, #copy, #current_request_event, #customer_accepts_responsibility!, delegate_validator, #detect_descriptor, #eventful_studies, for_study, #format_qc_information, #has_passed, #lab_events_for_batch, #manifest_processed!, #most_recent_event_named, #next_request_type_id, #next_requests, #next_requests_via_asset, #next_requests_via_submission, number_expected_for_submission_id_and_request_type_id, #previous_failed_requests?, #priority, #product_line, #project=, #project_id=, #ready?, #request_type_updatable?, #return_pending_to_inbox!, #run_events, #source_labware, #study=, #study_id=, #submission_plate_count, #submitted_at, #target_purpose, #target_tube, #update_pool_information, #update_priority, #update_responsibilities!

Methods included from Request::Statistics

#asset_statistics, #progress_statistics, #sample_statistics_new

Methods included from EventfulRecord

#has_many_events, #has_many_lab_events, #has_one_event_with_family

Methods included from Metadata

#has_metadata

Methods included from Batch::RequestBehaviour

included, #recycle_from_batch!, #return_for_inbox!, #with_batch_id

Methods included from Request::Statemachine

#cancellable?, #change_decision!, #closed?, #failed_downstream!, #failed_upstream!, #finished?, #on_blocked, #on_cancelled, #on_failed, #on_hold, #on_passed, #on_started, #open?, #terminated?, #transfer_aliquots

Methods included from StandardNamedScopes

included

Methods included from Commentable

#after_comment_addition

Methods included from AASM::Extensions

#transition_to

Methods included from Uuid::Uuidable

included, #unsaved_uuid!, #uuid

Methods included from Api::RequestIO::Extensions

included, #json_root

Methods included from Aliquot::DeprecatedBehaviours::Request

#tag, #tag_number

Methods inherited from ApplicationRecord

convert_labware_to_receptacle_for, find_by_id_or_name, find_by_id_or_name!

Methods included from Squishify

extended

Instance Method Details

#aliquot_attributesHash

Passed into cloned aliquots at the beginning of a pipeline to set appropriate options

Returns:

  • (Hash)

    A hash of aliquot attributes


25
26
27
28
29
30
31
32
33
34
# File 'app/models/illumina_htp/requests/gbs_request.rb', line 25

def aliquot_attributes
  {
    study_id: initial_study_id,
    project_id: initial_project_id,
    library_type: library_type,
    insert_size: insert_size,
    primer_panel_id: primer_panel_id,
    request_id: id
  }
end