Module: ModelExtensions::Plate

Included in:
Plate
Defined in:
app/api/model_extensions/plate.rb

Overview

Included in Plate The intent of this file was to provide methods specific to the V1 API

Defined Under Namespace

Modules: NamedScopeHelpers

Constant Summary collapse

PLATE_INCLUDES = 
:plate_metadata, { wells: %i[map transfer_requests_as_target uuid_object] }].freeze

Class Method Summary collapse

Instance Method Summary collapse

Class Method Details

.included(base) ⇒ Object 


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# File 'app/api/model_extensions/plate.rb', line 14

def self.included(base)
  base.class_eval do
    scope :include_plate_purpose, -> { includes(:plate_purpose) }
    scope :include_plate_metadata, -> { includes(:plate_metadata) }
    delegate :pool_id_for_well, to: :plate_purpose, allow_nil: true
  end
end

Instance Method Details

#library_source_plate ⇒ Object 


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# File 'app/api/model_extensions/plate.rb', line 22

def library_source_plate
  plate_purpose.library_source_plate(self)
end

#library_source_plates ⇒ Object 


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# File 'app/api/model_extensions/plate.rb', line 26

def library_source_plates
  plate_purpose.library_source_plate(self)
end

#pools ⇒ Object

Returns a hash from the submission for the pools to the wells that form that pool on this plate. This is not necessarily efficient but it is correct. Unpooled wells, those without submissions, are completely ignored within the returned result.


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# File 'app/api/model_extensions/plate.rb', line 33

def pools
  Request
    .include_request_metadata
    .for_pooling_of(self)
    .each_with_object({}) do |request, pools|
      pools[request.pool_id] =
        { wells: request.pool_into.split(','), pool_complete: request.pool_complete == 1 }.tap do |pool_information|
          request.update_pool_information(pool_information)
        end unless request.pool_id.nil?
    end
end

#pre_cap_groups ⇒ Object

Adds pre-capture pooling information, we need to delegate this to the stock plate, as we need all the wells Currently used in Transfer::BetweenPlates to set submission id, we should switch to doing this directly via Limber with transfer request collections


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# File 'app/api/model_extensions/plate.rb', line 48

def pre_cap_groups # rubocop:todo Metrics/AbcSize
  Request
    .include_request_metadata
    .for_pre_cap_grouping_of(self)
    .each_with_object({}) do |request, groups|
      groups[request.group_id] =
        { wells: request.group_into.split(',') }.tap do |pool_information|
          pool_information[:pre_capture_plex_level] ||= request.request_metadata.pre_capture_plex_level

          # We supply the submission id to assist with correctly tagging transfer requests later
          pool_information[:submission_id] ||= request.submission_id
        end unless request.group_id.nil?
    end
end