Module: StudyReport::WellDetails

Included in:
Well
Defined in:
app/models/study_report/well_details.rb

Overview

rubocop:todo Style/Documentation

Class Method Summary collapse

Instance Method Summary collapse

Class Method Details

.included(base) ⇒ Object


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# File 'app/models/study_report/well_details.rb', line 3

def self.included(base)
  base.class_eval do
    scope :for_study_report,
          -> {
            includes(
              [
                :map,
                :well_attribute,
                :events,
                {
                  plate: %i[plate_purpose events barcodes],
                  primary_aliquot: {
                    sample: [:sample_metadata, { sample_manifest: :supplier }]
                  }
                }
              ]
            )
          }
  end
end

Instance Method Details

#qc_reportObject

def genotyping_status

primary_aliquot.present? ? primary_aliquot.sample.genotyping_done : ''

end


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# File 'app/models/study_report/well_details.rb', line 28

def qc_report # rubocop:todo Metrics/AbcSize
  # well must be from a stock plate
  return {} unless plate.try(:stock_plate?)

  qc_data = super

  qc_data.merge!(
    well: map.description,
    concentration: well_attribute.concentration,
    sequenom_count: "#{get_sequenom_count.to_i}/30",
    sequenom_gender: get_gender_markers,
    pico: well_attribute.pico_pass,
    is_in_fluidigm: fluidigm_stamp_date,
    gel: well_attribute.gel_pass,
    plate_barcode: plate.barcode_number,
    measured_volume: well_attribute.measured_volume,
    current_volume: well_attribute.current_volume,
    gel_qc_date: gel_qc_date,
    pico_date: pico_date,
    qc_started_date: plate.qc_started_date,
    sequenom_stamp_date: plate.sequenom_stamp_date,
    quantity: well_attribute.quantity_in_micro_grams.try(:round, 3),
    initial_volume: well_attribute.initial_volume
  )
  qc_data
end