Method List
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#+ Mspire::MolecularFormula
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#<< Mspire::Bin
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#== Mspire::SpectrumLike
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#== CV::Param
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#== Mspire::MolecularFormula
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[] Mspire::Mzml::SourceFile
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#[] Mspire::Ident::Peptide::Db::IO
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#[] Mspire::SpectrumLike
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#[] Mspire::Mzml::IndexList
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[] Mspire::Digester
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[] Mspire::PeakList
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#[] Mspire::Ident::Peptide::Db
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[] Mspire::CV::Param
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#aaseq Mspire::Ident::PeptideHitLike
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#aaseq Mspire::Ident::Pepxml::SearchHit::Simple
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#accession Mspire::Mzml
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#accession CV::Param
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#accession Mspire::UserParam
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#accessionable_params Mspire::CV::Paramable
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#activation Mspire::Mzml::Precursor
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#add_ms_spectra! Mspire::Mzml::SpectrumList
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#add_ms_spectrum! Mspire::Mzml::SpectrumList
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#add_stylesheet Mspire::Ident::Pepxml
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#aminoacid Mspire::Ident::Pepxml::AminoacidModification
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#array_initialize Mspire::Mzml::DataArray
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#array_length Mspire::Imzml::DataArrayInfo
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#base_name Mspire::Ident::Pepxml::SearchSummary
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#base_name Mspire::Ident::Pepxml::MsmsRunSummary
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#bayes_factor Mspire::Quant::Qspec::Results
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bin Mspire::Bin
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#binary Mspire::Ident::Pepxml::AminoacidModification
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#block_arg Mspire::Ident::Pepxml::MsmsPipelineAnalysis
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#block_arg Mspire::Ident::Pepxml::MsmsRunSummary
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#block_arg Mspire::Ident::Pepxml::SearchSummary
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#bookmark IO
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#by_scans Mspire::Mzml::Index
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#calc_neutral_pep_mass Mspire::Ident::Pepxml::SearchHit
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#calc_pI Mspire::Ident::Pepxml::SearchHit
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calc_precursor_neutral_mass Mspire::Ident::Pepxml::SpectrumQuery
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calculate Mspire::Isotope::Distribution
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#cast Obo::Stanza
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#cast_method Obo::Stanza
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#centroided Mspire::SpectrumLike
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#centroided? Mspire::Mzml::Spectrum
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#centroided? Mspire::SpectrumLike
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#charge Mspire::Ident::PeptideHitLike
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#charge Mspire::Ident::Pepxml::SearchHit::Simple
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#charge Mspire::MolecularFormula
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#chromatogram_list Mspire::Mzml::Run
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#cleavage_sites Mspire::Digester
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#cleave_str Mspire::Digester
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cmdline Mspire::Ident::Peptide::Db
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#components Mspire::Mzml::InstrumentConfiguration
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#conditions Mspire::Quant::Qspec
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conditions_to_ints Mspire::Quant::Qspec
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#contacts Mspire::Mzml::FileDescription
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#counts_array Mspire::Quant::Qspec::Results
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create_bins Mspire::PeakList
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#create_file_description Mspire::Imzml::Writer
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#create_id_index Mspire::Mzml::Index
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#create_index_list Mspire::Mzml
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#create_referenceable_params_by_id_hash Mspire::Imzml::Writer
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#create_scan_to_index Mspire::Mzml::Index
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#cterm_cleavage Mspire::Digester
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#cterm_exception Mspire::Digester
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#cut Mspire::Ident::Pepxml::SampleEnzyme
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#cv_params Mspire::CV::Paramable
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#cv_ref CV::Param
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#cvs Mspire::Mzml
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#data Mspire::Bin
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#data_arrays Mspire::Mzml::DataArrayContainerLike
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#data_arrays Mspire::SpectrumLike
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#data_processing Mspire::Mzml::DataArrayContainerLike
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#data_processing_list Mspire::Mzml
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#database_name Mspire::Ident::Pepxml::SearchDatabase
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#database_release_date Mspire::Ident::Pepxml::SearchDatabase
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#database_release_identifier Mspire::Ident::Pepxml::SearchDatabase
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#date Mspire::Ident::Pepxml::MsmsPipelineAnalysis
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#default_array_length Mspire::Mzml::DataArrayContainerLike
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#default_data_processing Mspire::Mzml::ChromatogramList
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#default_data_processing Mspire::Mzml::SpectrumList
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#default_instrument_configuration Mspire::Mzml::Run
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#default_source_file Mspire::Mzml::Run
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#describe! Mspire::CV::Paramable
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#describe_many! Mspire::CV::Paramable
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#description Mspire::Ident::ProteinLike
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#description Mspire::Ident::Pepxml::TerminalModification
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#digest Mspire::Digester
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#each Mspire::Ident::Peptide::Db::IO
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#each_spectrum Mspire::Mzml
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#each_spectrum_node Mspire::Mzml
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#elements Mspire::OBO
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#elements Obo::Ontology
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#encoded_length Mspire::Imzml::DataArrayInfo
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#encoding Mspire::Mzml
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#enzymatic_search_constraint Mspire::Ident::Pepxml::SearchSummary
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executable Mspire::Quant::Qspec
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expand_peptides Mspire::Ident::Peptide::Db
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#experiment_hash_to_cvs Mspire::Imzml::Writer
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#extension Mspire::Ident::SearchGroup
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#external Mspire::Mzml::DataArray
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#fdr Mspire::Quant::Qspec::Results
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#fetch Mspire::CV::Paramable
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#fetch_by_accession Mspire::CV::Paramable
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#file_content Mspire::Mzml::FileDescription
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#file_description Mspire::Mzml
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filetype Mspire::Ident
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#find_all_nearest Mspire::SpectrumLike
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#find_all_nearest_index Mspire::SpectrumLike
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#find_nearest Mspire::SpectrumLike
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#find_nearest_index Mspire::SpectrumLike
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#flag Mspire::Quant::Qspec::Results
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#fold_change Mspire::Quant::Qspec::Results
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foreach Mspire::Mzml
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foreach Mspire::Fasta
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formula_to_exact_mass Mspire::Mass
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fppr Mspire::ErrorRate::Decoy
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#fragment_mass_type Mspire::Ident::Pepxml::SearchSummary
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from_aaseq Mspire::MolecularFormula
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from_binary Mspire::Mzml::DataArray
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#from_external_source_file Mspire::Mzml::Precursor
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#from_external_source_file Mspire::Mzml::Scan
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from_file Mspire::Ident::PeptideHit::Qvalue
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#from_file Mspire::Ident::SearchGroup
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#from_filenames Mspire::Ident::SearchGroup
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from_nist_line Mspire::Isotope
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from_peaklist Mspire::Spectrum
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from_pepxml_node Mspire::Ident::Pepxml::MsmsRunSummary
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#from_pepxml_node Mspire::Ident::Pepxml::SpectrumQuery
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#from_pepxml_node Mspire::Ident::Pepxml::SampleEnzyme
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#from_pepxml_node Mspire::Ident::Pepxml::MsmsRunSummary
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#from_pepxml_node Mspire::Ident::Pepxml::SearchSummary
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from_pepxml_node Mspire::Ident::Pepxml::SearchSummary
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#from_pepxml_node Mspire::Ident::Pepxml::SearchHit
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from_pepxml_node Mspire::Ident::Pepxml::SpectrumQuery
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from_pepxml_node Mspire::Ident::Pepxml::SampleEnzyme
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from_xml Mspire::Mzml::Precursor
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from_xml Mspire::Mzml::CV
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from_xml Mspire::Mzml::FileDescription
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from_xml Mspire::Mzml::SelectedIon
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from_xml Mspire::Mzml::Scan
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from_xml Mspire::Mzml::ScanWindow
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from_xml Mspire::Mzml::IsolationWindow
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from_xml Mspire::Mzml::Spectrum
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from_xml Mspire::Mzml::Activation
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#full_name Mspire::Mzml::CV
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#gene_id Mspire::Ident::ProteinLike
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#get_index_list Mspire::Mzml
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#get_xml_string Mspire::Mzml
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#header Obo::Ontology
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#header Mspire::OBO
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#hi_x Mspire::PeakList
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#hit_rank Mspire::Ident::Pepxml::SearchHit
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#id Mspire::Mzml::Run
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#id Mspire::Mzml::InstrumentConfiguration
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#id Mspire::Mzml::CV
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#id Mspire::Ident::SearchLike
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#id Mspire::Ident::PeptideHitLike
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#id Mspire::Mzml::ReferenceableParamGroup
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#id Mspire::Ident::ProteinLike
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#id Mspire::Mzml::Software
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#id Mspire::Mzml::ScanSettings
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#id Mspire::Mzml
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#id Mspire::Mzml::SourceFile
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#id Mspire::Mzml::DataArrayContainerLike
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#id Mspire::Ident::Pepxml::SearchHit::Simple
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#id Mspire::Mzml::Sample
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#id Mspire::Mzml::DataProcessing
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#id_to_cast Obo::Ontology
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#id_to_element Obo::Ontology
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#id_to_element Mspire::OBO
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#id_to_name Obo::Ontology
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#id_to_name Mspire::OBO
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#ids Mspire::Mzml::Index
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#image_hash_to_cvs Mspire::Imzml::Writer
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#in_groups Array
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#index Mspire::Ident::Peptide::Db::IO
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#index Mspire::Mzml::DataArrayContainerLike
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#index_list Mspire::Mzml
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index_offset Mspire::Mzml::Index
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#initialize Mspire::CV::Paramable
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#initialize Mspire::Mzml::Precursor
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#initialize Mspire::Ident::Pepxml::SampleEnzyme
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#initialize Mspire::Quant::Qspec
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#initialize Mspire::Mzml::Sample
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#initialize Mspire::UserParam
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#initialize Mspire::Ident::PeptideHit
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#initialize Mspire::Ident::Pepxml::SearchDatabase
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#initialize Mspire::Mzml::DataProcessing
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#initialize Mspire::MolecularFormula
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#initialize Mspire::Ident::Pepxml
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#initialize Mspire::Mzml::Scan
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#initialize Mspire::Mzml::ScanList
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#initialize Mspire::Ident::Pepxml::AminoacidModification
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#initialize CV::ReferenceableParamGroupRef
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#initialize Mspire::Digester
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#initialize Mspire::Ident::Peptide::Db::IO
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#initialize Mspire::Mzml::CV
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#initialize Mspire::Mzml::ReferenceableParamGroup
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#initialize Mspire::Mzml::FileDescription
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#initialize Mspire::Isotope
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#initialize Obo::Ontology
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#initialize Mspire::Mzml::Run
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#initialize Mspire::Ident::Pepxml::MsmsRunSummary
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#initialize Mspire::Mzml::ProcessingMethod
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#initialize Mspire::Plms1
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#initialize Mspire::Ident::Pepxml::TerminalModification
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#initialize Mspire::Quant::ProteinGroupComparison::Qspec
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#initialize Mspire::Mzml::Chromatogram
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#initialize Mspire::Mzml
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#initialize Mspire::Ident::Pepxml::SpectrumQuery
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#initialize Mspire::Mzml::DataArray
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#initialize Mspire::OBO
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#initialize Mspire::Bin
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#initialize CV::Param
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#initialize Mspire::Mzml::ChromatogramList
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#initialize Mspire::Ident::Peptide::Db
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#initialize Mspire::Mzml::Software
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#initialize Mspire::Ident::Protein
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#initialize Mspire::Mzml::InstrumentConfiguration
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#initialize Mspire::Ident::Pepxml::SearchSummary
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#initialize Mspire::Mzml::SourceFile
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#initialize Mspire::Mzml::Product
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#initialize Mspire::SpectrumLike
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#initialize Mspire::Ident::SearchGroup
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#initialize Mspire::Mzml::ScanSettings
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#initialize Mspire::Ident::Pepxml::MsmsPipelineAnalysis
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#initialize Mspire::Ident::Search
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#initialize Mspire::Ident::Pepxml::SearchHit
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#initialize Mspire::Ident::Pepxml::SearchResult
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#initialize Mspire::Mzml::Spectrum
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#initialize Mspire::Mzml::SpectrumList
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#inspect Mspire::Bin
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#instrument_configuration Mspire::Mzml::Scan
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#instrument_configurations Mspire::Mzml
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#intensities Mspire::SpectrumLike
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#intensities= Mspire::SpectrumLike
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#intensity Mspire::Spectrum::Centroidish
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#io Mspire::Mzml
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#io Mspire::Ident::Peptide::Db::IO
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#is_rejected Mspire::Ident::Pepxml::SearchHit
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#isolation_window Mspire::Mzml::Product
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#isolation_window Mspire::Mzml::Precursor
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#isotope_distribution Mspire::MolecularFormula
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#isotope_distribution_spectrum Mspire::MolecularFormula
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isotopes_from_nist_site Mspire::Isotope::Updater
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#keys Mspire::Ident::Peptide::Db::IO
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list_xml Mspire::Mzml::ReferenceableParamGroup
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list_xml Mspire::Mzml::DataArray
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#list_xml Mspire::Mzml::List
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list_xml Mspire::Mzml::CV
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#list_xml_element Mspire::Mzml::List
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#lo_x Mspire::PeakList
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#local_path Mspire::Ident::Pepxml::SearchDatabase
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#location Mspire::Mzml::SourceFile
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mascot_parse Mspire::Digester
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#mass Mspire::Ident::Pepxml::TerminalModification
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#mass Mspire::Ident::Pepxml::AminoacidModification
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#mass Mspire::MolecularFormula
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#massdiff Mspire::Ident::Pepxml::AminoacidModification
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#massdiff Mspire::Ident::Pepxml::TerminalModification
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#massdiff Mspire::Ident::Pepxml::SearchHit
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members Mspire::Ident::Pepxml::SearchHit
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#members Mspire::Ident::Pepxml::SearchHit
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members Mspire::Ident::Pepxml::SpectrumQuery
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#members Mspire::Ident::Pepxml::SpectrumQuery
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merge Mspire::PeakList
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#merge! Merge
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merge_centroids Mspire::PeakList
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min_max_x Mspire::PeakList
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#missed_cleavages Mspire::Ident::PeptideHitLike
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mixed_target_decoy Mspire::ErrorRate::Qvalue
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#modification_info Mspire::Ident::Pepxml::SearchHit
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#modifications Mspire::Ident::Pepxml::SearchSummary
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#ms_detector Mspire::Ident::Pepxml::MsmsRunSummary
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#ms_ionization Mspire::Ident::Pepxml::MsmsRunSummary
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#ms_level Mspire::SpectrumLike
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#ms_level Mspire::Mzml::Spectrum
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#ms_manufacturer Mspire::Ident::Pepxml::MsmsRunSummary
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#ms_mass_analyzer Mspire::Ident::Pepxml::MsmsRunSummary
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#ms_model Mspire::Ident::Pepxml::MsmsRunSummary
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#msms_pipeline_analysis Mspire::Ident::Pepxml
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#msms_run_summary Mspire::Ident::Pepxml::MsmsPipelineAnalysis
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#mz Mspire::Spectrum::Centroidish
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#mzs Mspire::SpectrumLike
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#mzs= Mspire::SpectrumLike
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#mzs_and_intensities Mspire::SpectrumLike
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#name Mspire::Mzml::Index
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#name Mspire::Mzml::Sample
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#name Mspire::UserParam
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#name Mspire::Mzml::SourceFile
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#name Mspire::Digester
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#name Mspire::Ident::Pepxml::SampleEnzyme
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#name CV::Param
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#name_to_id Obo::Ontology
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#name_to_id Mspire::OBO
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new Mspire::Fasta
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#no_cut Mspire::Ident::Pepxml::SampleEnzyme
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#normalize Mspire::SpectrumLike
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#num_matched_ions Mspire::Ident::Pepxml::SearchHit
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#num_missed_cleavages Mspire::Ident::Pepxml::SampleEnzyme
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#num_missed_cleavages Mspire::Ident::Pepxml::SearchHit
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#num_tol_term Mspire::Ident::Pepxml::SearchHit
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#num_tol_term Mspire::Ident::Pepxml::SampleEnzyme
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#num_tot_proteins Mspire::Ident::Pepxml::SearchHit
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#offset Mspire::Imzml::DataArrayInfo
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#old_bracket_slice Mspire::Mzml::IndexList
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open Mspire::Ident::Peptide::Db::IO
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open Mspire::Mzml
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open Mspire::Fasta
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#openany Top Level Namespace
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#order Mspire::Mzml::Component
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#order Mspire::Mzml::ProcessingMethod
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#orig_database_url Mspire::Ident::Pepxml::SearchDatabase
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#out_data Mspire::Ident::Pepxml::SearchSummary
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#out_data_type Mspire::Ident::Pepxml::SearchSummary
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#param? Mspire::CV::Paramable
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#param_by_accession Mspire::CV::Paramable
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#parameters Mspire::Ident::Pepxml::SearchSummary
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#params Mspire::CV::Paramable
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#params? Mspire::CV::Paramable
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#params_initialize Mspire::Mzml::DataArray
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#params_initialize Mspire::Mzml::Spectrum
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#params_to_xml Mspire::Mzml::DataArray
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#peak_boundaries Mspire::PeakList
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#peaks Mspire::SpectrumLike
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#peptide Mspire::Ident::Pepxml::SearchHit
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peptide_centric_db Mspire::Ident::Peptide::Db
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#peptide_hits Mspire::Ident::ProteinGroup
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#peptide_hits Mspire::Ident::SearchLike
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peptide_hits_to_protein_groups Mspire::Ident::ProteinGroup
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#peptide_next_aa Mspire::Ident::Pepxml::SearchHit
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#peptide_prev_aa Mspire::Ident::Pepxml::SearchHit
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#peptide_terminus Mspire::Ident::Pepxml::AminoacidModification
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#pepxml_version Mspire::Ident::Pepxml::MsmsRunSummary
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#pepxml_version Mspire::Ident::Pepxml
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#pepxml_version Mspire::Ident::Pepxml::MsmsPipelineAnalysis
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precision Mspire::ErrorRate::Decoy
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#precursor Mspire::Mzml::Chromatogram
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#precursor_charge Mspire::Mzml::Spectrum
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#precursor_mass_type Mspire::Ident::Pepxml::SearchSummary
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#precursor_mz Mspire::Mzml::Spectrum
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#precursors Mspire::SpectrumLike
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#precursors Mspire::Mzml::Spectrum
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prepare_sequence Mspire::Ident::Peptide
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#processing_methods Mspire::Mzml::DataProcessing
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#product Mspire::Mzml::Chromatogram
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#products Mspire::SpectrumLike
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#products Mspire::Mzml::Spectrum
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#profile? Mspire::Mzml::Spectrum
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#protein Mspire::Ident::Pepxml::SearchHit
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#protein_desc Mspire::Ident::Pepxml::SearchHit
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#protein_mw Mspire::Ident::Pepxml::SearchHit
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#protein_terminus Mspire::Ident::Pepxml::TerminalModification
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#proteins Mspire::Ident::PeptideHitLike
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#protid Mspire::Quant::Qspec::Results
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#qspec_results_struct Mspire::Quant::ProteinGroupComparison::Qspec
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#qvalue Mspire::Ident::PeptideHitLike
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#raw_data Mspire::Ident::Pepxml::MsmsRunSummary
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#raw_data_type Mspire::Ident::Pepxml::MsmsRunSummary
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#raw_isotope_distribution Mspire::MolecularFormula
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#rb_stat Mspire::Quant::Qspec::Results
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#read Mspire::Plms1
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#read_float64 Mspire::Plms1
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#read_header! Mspire::Mzml
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#read_index_list Mspire::Mzml
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#read_uint32 Mspire::Plms1
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#ref_param_groups Mspire::CV::Paramable
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#referenceable_param_groups Mspire::Mzml
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remove_non_amino_acids Mspire::Ident::Peptide
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results_array Mspire::Quant::Qspec
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#retention_time Mspire::Mzml::Spectrum
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#run Mspire::Quant::Qspec
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run Mspire::Imzml::Writer::Commandline
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#run Mspire::Mzml
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#sample Mspire::Mzml::Run
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#sample_enzyme Mspire::Ident::Pepxml::MsmsRunSummary
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#samples Mspire::Mzml
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#scan_list Mspire::Mzml::Spectrum
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#scan_numbers Mspire::Plms1
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#scan_settings_list Mspire::Mzml
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#scan_windows Mspire::Mzml::Scan
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#scans Mspire::SpectrumLike
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#search Mspire::Ident::Pepxml::SearchHit::Simple
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#search Mspire::Ident::PeptideHitLike
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#search_class Mspire::Ident::SearchGroup
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#search_database Mspire::Ident::Pepxml::SearchSummary
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#search_engine Mspire::Ident::Pepxml::SearchSummary
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#search_hits Mspire::Ident::Pepxml::SearchResult
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#search_id Mspire::Ident::Pepxml::SearchSummary
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#search_scores Mspire::Ident::Pepxml::SearchHit::Simple
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#search_scores Mspire::Ident::Pepxml::SearchHit
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#search_summary Mspire::Ident::Pepxml::MsmsRunSummary
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#searches Mspire::Ident::SearchGroup
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#selected_ions Mspire::Mzml::Precursor
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#sense Mspire::Ident::Pepxml::SampleEnzyme
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#seq_type Mspire::Ident::Pepxml::SearchDatabase
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#sequence Mspire::Ident::ProteinLike
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sequence_to_aaseq Mspire::Ident::Peptide
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#set_size_of_residues! Mspire::Ident::Pepxml::SearchDatabase
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#set_trypsin Mspire::Ident::Pepxml::SampleEnzyme
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simple_search_hits Mspire::Ident::Pepxml
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#site_digest Mspire::Digester
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#size Mspire::SpectrumLike
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#size Mspire::Mzml
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#size Mspire::Ident::Peptide::Db::IO
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#size_of_residues Mspire::Ident::Pepxml::SearchDatabase
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#software Mspire::Mzml::InstrumentConfiguration
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#software Mspire::Mzml::ProcessingMethod
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#software_list Mspire::Mzml
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#sort! Mspire::SpectrumLike
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#source_file Mspire::Mzml::Spectrum
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#source_files Mspire::Mzml::FileDescription
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#spectra Mspire::Plms1
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#spectrum Mspire::Mzml::Precursor
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#spectrum Mspire::Mzml::Scan
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#spectrum Mspire::Mzml
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spectrum Mspire::Isotope::Distribution
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#spectrum_from_scan_num Mspire::Mzml
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#spectrum_list Mspire::Mzml::Run
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#spectrum_node Mspire::Mzml
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#spectrum_node_from_start_byte Mspire::Mzml
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#spectrum_queries Mspire::Ident::Pepxml
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#spectrum_queries Mspire::Ident::Pepxml::MsmsRunSummary
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#spectrum_query Mspire::Ident::Pepxml::SearchHit
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#split Mspire::PeakList
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#split_contiguous Mspire::PeakList
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#split_on_zeros Mspire::PeakList
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split_sequence Mspire::Ident::Peptide
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#spot_id Mspire::Mzml::Spectrum
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#start_byte Mspire::Mzml::Index
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#start_byte_and_id Mspire::Mzml::Index
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#start_time_stamp Mspire::Mzml::Run
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#summary_xml Mspire::Ident::Pepxml::MsmsPipelineAnalysis
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#symbol Mspire::Ident::Pepxml::AminoacidModification
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#symbol Mspire::Ident::Pepxml::TerminalModification
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target_decoy_qvalues Mspire::ErrorRate::Qvalue
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#terminus Mspire::Ident::Pepxml::TerminalModification
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#tic Mspire::SpectrumLike
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#times Mspire::Plms1
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#to_binary Mspire::Mzml::DataArray
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to_binary Mspire::Mzml::DataArray
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to_file Mspire::Ident::PeptideHit::Qvalue
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#to_hash Mspire::MolecularFormula
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#to_paths Mspire::Ident::SearchGroup
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to_phq Mspire::Ident::PeptideHit::Qvalue
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#to_plms1 Mspire::Mzml
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#to_plus_minus_string Numeric
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#to_s Mspire::MolecularFormula
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#to_xml Mspire::Ident::Pepxml::Parameters
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#to_xml Mspire::Mzml::ProcessingMethod
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#to_xml Mspire::Mzml::ChromatogramList
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#to_xml Mspire::Mzml::FileDescription
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#to_xml Mspire::Mzml::DataProcessing
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#to_xml Mspire::Ident::Pepxml::TerminalModification
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#to_xml Mspire::Ident::Pepxml::SampleEnzyme
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#to_xml Mspire::Ident::Pepxml::SpectrumQuery
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#to_xml Mspire::Ident::Pepxml::AminoacidModification
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#to_xml Mspire::Ident::Pepxml::SearchHit
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#to_xml CV::ReferenceableParamGroupRef
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#to_xml Mspire::Ident::Pepxml::SearchSummary
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#to_xml Mspire::Ident::Pepxml::SearchResult
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#to_xml Mspire::Ident::Pepxml::SearchDatabase
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#to_xml Mspire::Mzml::InstrumentConfiguration
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#to_xml Mspire::Mzml::SpectrumList
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#to_xml Mspire::Mzml::ScanSettings
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#to_xml Mspire::Mzml::FileContent
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#to_xml Mspire::Mzml::Chromatogram
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#to_xml Mspire::Mzml::SourceFile
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#to_xml Mspire::Ident::Pepxml::MsmsRunSummary
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#to_xml Mspire::Mzml::DataArray
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#to_xml Mspire::Mzml::Precursor
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#to_xml Mspire::Mzml::ScanList
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#to_xml Mspire::Mzml::Component
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#to_xml Mspire::Mzml::Spectrum
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#to_xml Mspire::Mzml::Software
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#to_xml Mspire::Mzml::Product
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#to_xml Mspire::Mzml::Contact
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#to_xml Mspire::Ident::Pepxml
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#to_xml Mspire::CV::Paramable
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#to_xml Mspire::Mzml::Sample
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#to_xml Mspire::Mzml::DataArrayContainerLike
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#to_xml Mspire::Mzml::Scan
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#to_xml Mspire::Mzml::ReferenceableParamGroup
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#to_xml Mspire::Mzml::CV
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#to_xml Mspire::Ident::Pepxml::MsmsPipelineAnalysis
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#to_xml Mspire::Mzml::Run
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#to_xml Mspire::Mzml
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#to_xml CV::Param
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#to_xml_definition Mspire::Mzml::ReferenceableParamGroup
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#tot_num_ions Mspire::Ident::Pepxml::SearchHit
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#type Mspire::Mzml::DataArray
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#type Mspire::UserParam
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#type= Mspire::Mzml::DataArray
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#unit Mspire::UserParam
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#unit CV::Param
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#uri Mspire::Mzml::CV
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uri_basename_and_path Mspire::Mzml::SourceFile
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#user_params Mspire::CV::Paramable
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#value Mspire::UserParam
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#value CV::Param
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#values Mspire::Ident::Peptide::Db::IO
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#variable Mspire::Ident::Pepxml::TerminalModification
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#variable Mspire::Ident::Pepxml::AminoacidModification
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#version Mspire::Mzml::Software
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#version Mspire::Mzml::CV
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#version Mspire::Mzml
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#weighted_x Mspire::PeakList
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#write Mspire::Imzml::Writer
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#write Mspire::Quant::Qspec
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#write Mspire::Plms1
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#write_ascii Mspire::Plms1
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#write_binary Mspire::Imzml::Writer
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#write_data_array Mspire::Imzml::Writer
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#write_file_or_string Top Level Namespace
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#write_float64 Mspire::Plms1
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write_nist_info Mspire::Isotope::Updater
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#write_uint32 Mspire::Plms1
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#x= Mspire::Peak
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#x_y_positions Mspire::Imzml::Writer
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#xmlns Mspire::Ident::Pepxml::MsmsPipelineAnalysis
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#xmlns_xsi Mspire::Ident::Pepxml::MsmsPipelineAnalysis
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#xsi_schema_location Mspire::Ident::Pepxml::MsmsPipelineAnalysis
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#y= Mspire::Peak