Module: Bio::Big::FrameCodonHelpers::TrackSequenceTrait

Included in:
FrameCodonSequence
Defined in:
lib/bigbio/db/emitters/orf_emitter.rb

Overview

Track sequence position in parent sequence (in nucleotides)

Instance Attribute Summary collapse

Class Method Summary collapse

Instance Attribute Details

#track_ntseq_pos ⇒ Object

Returns the value of attribute track_ntseq_pos.



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# File 'lib/bigbio/db/emitters/orf_emitter.rb', line 14

def track_ntseq_pos
  @track_ntseq_pos
end

Class Method Details

.update_reversed_sequence_pos(orfs, ntseq_pos) ⇒ Object 



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# File 'lib/bigbio/db/emitters/orf_emitter.rb', line 19

def TrackSequenceTrait.update_reversed_sequence_pos orfs, ntseq_pos
  # is the same
  orfs.each { | orf | orf.track_ntseq_pos = ntseq_pos + orf.pos*3 }
  orfs
end

.update_sequence_pos(orfs, ntseq_pos) ⇒ Object 



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# File 'lib/bigbio/db/emitters/orf_emitter.rb', line 15

def TrackSequenceTrait.update_sequence_pos orfs, ntseq_pos
  orfs.each { | orf | orf.track_ntseq_pos = ntseq_pos + orf.pos*3 }
  orfs
end