Class: ORFnucleotides

Inherits:
ORFsequence show all
Defined in:
lib/bigbio/sequence/predictorf.rb

Overview

Helper class for storing ORF information

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(sequence, start, stop) ⇒ ORFnucleotides

Returns a new instance of ORFnucleotides.



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# File 'lib/bigbio/sequence/predictorf.rb', line 16

def initialize sequence, start, stop
  super(sequence)
  @start = start
  @stop = stop
end

Instance Attribute Details

#start ⇒ Object (readonly)

Returns the value of attribute start.



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# File 'lib/bigbio/sequence/predictorf.rb', line 15

def start
  @start
end

#stop ⇒ Object (readonly)

Returns the value of attribute stop.



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# File 'lib/bigbio/sequence/predictorf.rb', line 15

def stop
  @stop
end

Instance Method Details

#fullseq ⇒ Object 



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# File 'lib/bigbio/sequence/predictorf.rb', line 26

def fullseq
  @seq
end

#seq ⇒ Object 



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# File 'lib/bigbio/sequence/predictorf.rb', line 22

def seq
  @seq[@start..@stop-1]
end

#to_s ⇒ Object 



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# File 'lib/bigbio/sequence/predictorf.rb', line 30

def to_s
  seq
end