Module: CodeRunner::NewHydra

Defined in:
lib/coderunner/system_modules/new_hydra.rb

Instance Method Summary collapse

Instance Method Details

#cancel_job ⇒ Object 



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# File 'lib/coderunner/system_modules/new_hydra.rb', line 20

def cancel_job
	`qdel #{@job_no}`
end

#error_file ⇒ Object 



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# File 'lib/coderunner/system_modules/new_hydra.rb', line 24

def error_file
	return "#{executable_name}.sh.e#{@job_no}"
end

#execute ⇒ Object 



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# File 'lib/coderunner/system_modules/new_hydra.rb', line 16

def execute
	system run_command
end

#output_file ⇒ Object 



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# File 'lib/coderunner/system_modules/new_hydra.rb', line 28

def output_file
	return "#{executable_name}.sh.o#{@job_no}"
end

#queue_status ⇒ Object 



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# File 'lib/coderunner/system_modules/new_hydra.rb', line 4

def queue_status
	%x[qstat | grep $LOGNAME]
end

#run_command ⇒ Object 



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# File 'lib/coderunner/system_modules/new_hydra.rb', line 8

def run_command
	if @runner.debug
		return %[mpisubshort "40mins" #{@nprocs} #{executable_location}/#{executable_name} #{parameter_string}  ]
	else 
		return %[mpisubnoquotes "0.5-10 hrs" #{@nprocs} #{executable_location}/#{executable_name} #{parameter_string}]
	end
end