Class: Bio::DTASelect::OutputFile::SelectedProtein

Inherits:
Object
  • Object
show all
Includes:
Bio::DivvyProteomics::DivvyableProtein, Bio::DivvyProteomics::Logging
Defined in:
lib/dta_select_output.rb

Instance Attribute Summary collapse

Instance Method Summary collapse

Methods included from Bio::DivvyProteomics::DivvyableProtein

#estimated_spectral_count, #non_unique_spectra, #unique_spectra, #uniquely_identified_by_any_peptides?

Constructor Details

#initialize ⇒ SelectedProtein

Returns a new instance of SelectedProtein.



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# File 'lib/dta_select_output.rb', line 23

def initialize
  @peptides = []
end

Instance Attribute Details

#descriptive_name ⇒ Object

Returns the value of attribute descriptive_name.



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# File 'lib/dta_select_output.rb', line 19

def descriptive_name
  @descriptive_name
end

#identifier ⇒ Object

Returns the value of attribute identifier.



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# File 'lib/dta_select_output.rb', line 17

def identifier
  @identifier
end

#length ⇒ Object

Returns the value of attribute length.



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# File 'lib/dta_select_output.rb', line 19

def length
  @length
end

#molwt ⇒ Object

Returns the value of attribute molwt.



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# File 'lib/dta_select_output.rb', line 19

def molwt
  @molwt
end

#peptides ⇒ Object

Returns the value of attribute peptides.



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# File 'lib/dta_select_output.rb', line 21

def peptides
  @peptides
end

#pi ⇒ Object

Returns the value of attribute pi.



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# File 'lib/dta_select_output.rb', line 19

def pi
  @pi
end

#sequence_count ⇒ Object

Returns the value of attribute sequence_count.



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# File 'lib/dta_select_output.rb', line 19

def sequence_count
  @sequence_count
end

#sequence_coverage ⇒ Object

Returns the value of attribute sequence_coverage.



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# File 'lib/dta_select_output.rb', line 19

def sequence_coverage
  @sequence_coverage
end

#spectrum_count ⇒ Object

Returns the value of attribute spectrum_count.



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# File 'lib/dta_select_output.rb', line 19

def spectrum_count
  @spectrum_count
end

#validation_status ⇒ Object

Returns the value of attribute validation_status.



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# File 'lib/dta_select_output.rb', line 19

def validation_status
  @validation_status
end

Instance Method Details

#log ⇒ Object 



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# File 'lib/dta_select_output.rb', line 29

def log
  Bio::Log::LoggerPlus[LOG_NAME]
end