Class: Bio::PepXML::Peptide

Inherits:

Object

Object
Bio::PepXML::Peptide

show all

Defined in:: lib/pep_xml.rb

Overview

Named ‘Peptide’ but really mean Spectra. Just too hard to change

Instance Attribute Summary collapse

#identifier ⇒ Object

Name of the spectra.
#parent_proteins ⇒ Object

Returns the value of attribute parent_proteins.

Instance Method Summary collapse

#initialize ⇒ Peptide constructor

A new instance of Peptide.
#redundancy ⇒ Object

TODO: right now this just always returns 1.

Constructor Details

#initialize ⇒ `Peptide`

Returns a new instance of Peptide.



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# File 'lib/pep_xml.rb', line 25

def initialize
  @parent_proteins = []
end

Instance Attribute Details

#identifier ⇒ `Object`

Name of the spectra



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# File 'lib/pep_xml.rb', line 23

def identifier
  @identifier
end

#parent_proteins ⇒ `Object`

Returns the value of attribute parent_proteins.



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# File 'lib/pep_xml.rb', line 20

def parent_proteins
  @parent_proteins
end

Instance Method Details

#redundancy ⇒ `Object`

TODO: right now this just always returns 1. It should really be working out redundancy properly by comparison of peptide sequences, but this isn’t yet parsed this info



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# File 'lib/pep_xml.rb', line 31

def redundancy
  1
end