Class: Bio::Blast::WU::Report::HSP

Inherits:

Default::Report::HSP

• Object
• Default::Report::HSP
• Bio::Blast::WU::Report::HSP

Defined in:

lib/bio/appl/blast/wublast.rb

Overview

Bio::Blast::WU::Report::HSP holds information about the hsp (high-scoring segment pair).

Because it inherits Bio::Blast::Default::Report::HSP, please also refer Bio::Blast::Default::Report::HSP.

Instance Attribute Summary

• #p_sum_n ⇒ Object readonly

  p_sum_n (???).

• #pvalue ⇒ Object readonly

  p-value.

Attributes inherited from Default::Report::HSP

#align_len, #bit_score, #evalue, #gaps, #hit_frame, #hit_from, #hit_strand, #hit_to, #hseq, #identity, #midline, #percent_gaps, #percent_identity, #percent_positive, #positive, #qseq, #query_frame, #query_from, #query_strand, #query_to, #score, #stat_method

Method Summary

Methods inherited from Default::Report::HSP

#initialize

Constructor Details

This class inherits a constructor from Bio::Blast::Default::Report::HSP

Instance Attribute Details

#p_sum_n ⇒ Object (readonly)

p_sum_n (???)

# File 'lib/bio/appl/blast/wublast.rb', line 322

def p_sum_n
  @p_sum_n
end

#pvalue ⇒ Object (readonly)

p-value

# File 'lib/bio/appl/blast/wublast.rb', line 319

def pvalue
  @pvalue
end