Class: Bio::KEGG::REACTION

Inherits:
Bio::KEGGDB show all
Defined in:
lib/bio/db/kegg/reaction.rb

Constant Summary collapse

DELIMITER = 
RS = "\n///\n"
TAGSIZE = 
12

Instance Method Summary collapse

Methods inherited from DB

#exists?, #fetch, #get, open, #tags

Constructor Details

#initialize(entry) ⇒ REACTION

Returns a new instance of REACTION.



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# File 'lib/bio/db/kegg/reaction.rb', line 20

def initialize(entry)
  super(entry, TAGSIZE)
end

Instance Method Details

#definition ⇒ Object

DEFINITION



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# File 'lib/bio/db/kegg/reaction.rb', line 35

def definition
  field_fetch('DEFINITION')
end

#entry_id ⇒ Object

ENTRY



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# File 'lib/bio/db/kegg/reaction.rb', line 25

def entry_id
  field_fetch('ENTRY')[/\S+/]
end

#enzymes ⇒ Object

ENZYME



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# File 'lib/bio/db/kegg/reaction.rb', line 58

def enzymes
  unless @data['ENZYME']
    @data['ENZYME'] = fetch('ENZYME').scan(/\S+/)
  end
  @data['ENZYME']
end

#equation ⇒ Object

EQUATION



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# File 'lib/bio/db/kegg/reaction.rb', line 40

def equation
  field_fetch('EQUATION')
end

#name ⇒ Object

NAME



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# File 'lib/bio/db/kegg/reaction.rb', line 30

def name
  field_fetch('NAME') 
end

#pathways ⇒ Object

PATHWAY



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# File 'lib/bio/db/kegg/reaction.rb', line 53

def pathways
  lines_fetch('PATHWAY') 
end

#rpairs ⇒ Object

RPAIR



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# File 'lib/bio/db/kegg/reaction.rb', line 45

def rpairs
  unless @data['RPAIR']
    @data['RPAIR'] = fetch('RPAIR').split(/\s+/)
  end
  @data['RPAIR']
end