Class: Bio::TRANSFAC::SITE

Inherits:
Bio::TRANSFAC show all
Defined in:
lib/bio/db/transfac.rb

Constant Summary

Constants inherited from Bio::TRANSFAC

DELIMITER, TAGSIZE

Instance Method Summary collapse

Methods inherited from Bio::TRANSFAC

#ac, #cc, #dt, #oc, #os, #ra, #rl, #rn, #rt

Methods inherited from DB

#entry_id, #exists?, #fetch, #get, open, #tags

Constructor Details

#initialize(entry) ⇒ SITE

Returns a new instance of SITE.



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# File 'lib/bio/db/transfac.rb', line 141

def initialize(entry)
  super(entry)
end

Instance Method Details

#bf ⇒ Object 



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# File 'lib/bio/db/transfac.rb', line 177

def bf
  field_fetch('BF')
end

#de ⇒ Object 



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# File 'lib/bio/db/transfac.rb', line 149

def de
  field_fetch('DE')
end

#dr ⇒ Object

DR Cross-references to other databases (>=0 per entry)



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# File 'lib/bio/db/transfac.rb', line 190

def dr
  field_fetch('DR')
end

#el ⇒ Object 



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# File 'lib/bio/db/transfac.rb', line 161

def el
  field_fetch('EL')
end

#mm ⇒ Object 



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# File 'lib/bio/db/transfac.rb', line 185

def mm
  field_fetch('MM')
end

#re ⇒ Object 



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# File 'lib/bio/db/transfac.rb', line 153

def re
  field_fetch('RE')
end

#s1 ⇒ Object 



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# File 'lib/bio/db/transfac.rb', line 173

def s1
  field_fetch('S1')
end

#sf ⇒ Object 



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# File 'lib/bio/db/transfac.rb', line 165

def sf
  field_fetch('SF')
end

#so ⇒ Object 



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# File 'lib/bio/db/transfac.rb', line 181

def so 
  field_fetch('SO')
end

#sq ⇒ Object 



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# File 'lib/bio/db/transfac.rb', line 157

def sq
  field_fetch('SQ')
end

#st ⇒ Object 



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# File 'lib/bio/db/transfac.rb', line 169

def st
  field_fetch('ST')
end

#ty ⇒ Object 



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# File 'lib/bio/db/transfac.rb', line 145

def ty
  field_fetch('TY')
end