Class: Pathname
- Inherits:
-
Object
- Object
- Pathname
- Defined in:
- lib/metamri/core_additions.rb
Constant Summary collapse
- MIN_PFILE_SIZE =
10_000_000
Instance Method Summary collapse
- #all_dicoms ⇒ Object
- #each_pfile(min_file_size = MIN_PFILE_SIZE) ⇒ Object
- #each_subdirectory ⇒ Object
- #first_dicom ⇒ Object
-
#local_copy(tempdir = Dir.mktmpdir, &block) ⇒ Object
Creates a local, unzipped copy of a file for use in scanning.
- #recursive_local_copy(ignore_patterns = [], &block) ⇒ Object
- #should_be_skipped ⇒ Object
Instance Method Details
#all_dicoms ⇒ Object
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# File 'lib/metamri/core_additions.rb', line 80 def all_dicoms local_copies = [] Dir.mktmpdir do |tempdir| # begin entries.each do |leaf| branch = self + leaf if leaf.to_s =~ /^I\.(\.bz2)?$|\.dcm(\.bz2)?$|\.[0-9]+(\.bz2)?$/ local_copies << branch.local_copy(tempdir) end end yield local_copies # ensure # No ensure needed since Dir.mktmpdir will implode after a block. # local_copies.each { |lc| lc.delete if lc.exist? } # end end return end |
#each_pfile(min_file_size = MIN_PFILE_SIZE) ⇒ Object
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# File 'lib/metamri/core_additions.rb', line 40 def each_pfile(min_file_size = MIN_PFILE_SIZE) entries.each do |leaf| next unless leaf.to_s =~ /^P.{5}\.7(\.bz2)/ branch = self + leaf next if branch.symlink? if branch.size >= min_file_size lc = branch.local_copy begin yield lc rescue StandardError => e case $LOG.level when Logger::DEBUG raise e else puts "#{e}" end ensure lc.delete end end end end |
#each_subdirectory ⇒ Object
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# File 'lib/metamri/core_additions.rb', line 29 def each_subdirectory each_entry do |leaf| next if leaf.to_s =~ /^\./ branch = self + leaf next if not branch.directory? next if branch.symlink? branch.each_subdirectory { |subbranch| yield subbranch } yield branch end end |
#first_dicom ⇒ Object
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# File 'lib/metamri/core_additions.rb', line 63 def first_dicom entries.each do |leaf| branch = self + leaf if leaf.to_s =~ /^I\..*(\.bz2)?$|\.dcm(\.bz2)?$|\.[0-9]{2,}(\.bz2)?$/ lc = branch.local_copy begin yield lc rescue Exception => e puts "#{e}" ensure lc.delete end return end end end |
#local_copy(tempdir = Dir.mktmpdir, &block) ⇒ Object
Creates a local, unzipped copy of a file for use in scanning. Will return a pathname to the local copy if called directly, or can also be passed a block. If it is passed a block, it will create the local copy and ensure the local copy is deleted.
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# File 'lib/metamri/core_additions.rb', line 127 def local_copy(tempdir = Dir.mktmpdir, &block) tfbase = self.to_s =~ /\.bz2$/ ? self.basename.to_s.chomp(".bz2") : self.basename.to_s tfbase.escape_filename tmpfile = File.join(tempdir, tfbase) # puts tmpfile # puts File.exist?(tmpfile) File.delete(tmpfile) if File.exist?(tmpfile) if self.to_s =~ /\.bz2$/ `bunzip2 -k -c '#{self.to_s}' >> '#{tmpfile}'` else FileUtils.cp(self.to_s, tmpfile) end lc = Pathname.new(tmpfile) if block begin yield lc ensure lc.delete end else return lc end end |
#recursive_local_copy(ignore_patterns = [], &block) ⇒ Object
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# File 'lib/metamri/core_additions.rb', line 102 def recursive_local_copy(ignore_patterns = [], &block) tempdir = Dir.mktmpdir('local_orig') entries.each do |leaf| puts branch = self + leaf next if branch.directory? ignore_patterns.collect { |pat| next if leaf.to_s =~ pattern } next if branch.should_be_skipped puts "Locally provisioning #{leaf}" lc = branch.local_copy(tempdir) lc.chmod(0444 | 0200 | 0020 ) end return tempdir end |
#should_be_skipped ⇒ Object
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# File 'lib/metamri/core_additions.rb', line 118 def should_be_skipped self.to_s =~ /^\./ || self.symlink? end |