Class: Ms::Mascot::Dat::Peptides::ProteinMap

Inherits:
Struct
  • Object
show all
Defined in:
lib/ms/mascot/dat/peptides.rb

Overview

ProteinMap

Represents a protein map, indicating which proteins contain the identified peptide. There may be many for a given peptide hit

# str:   "Y1319_MYCTU":0:531:535:1,"Y1353_MYCBO":0:531:535:1
# terms: R,-:R,-

index  example              meaning
0      "Y1319_MYCTU"        matching protein id
1      0
2      531                  peptide start index
3      535                  peptide end index
4      1
5      R                    nterm
6      -                    cterm

Instance Attribute Summary collapse

Instance Attribute Details

#cterm ⇒ Object

Returns the value of attribute cterm

Returns:

  • (Object) —

    the current value of cterm



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# File 'lib/ms/mascot/dat/peptides.rb', line 112

def cterm
  @cterm
end

#id ⇒ Object

Returns the value of attribute id

Returns:

  • (Object) —

    the current value of id



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# File 'lib/ms/mascot/dat/peptides.rb', line 112

def id
  @id
end

#nterm ⇒ Object

Returns the value of attribute nterm

Returns:

  • (Object) —

    the current value of nterm



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# File 'lib/ms/mascot/dat/peptides.rb', line 112

def nterm
  @nterm
end

#peptide_end ⇒ Object

Returns the value of attribute peptide_end

Returns:

  • (Object) —

    the current value of peptide_end



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# File 'lib/ms/mascot/dat/peptides.rb', line 112

def peptide_end
  @peptide_end
end

#peptide_start ⇒ Object

Returns the value of attribute peptide_start

Returns:

  • (Object) —

    the current value of peptide_start



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# File 'lib/ms/mascot/dat/peptides.rb', line 112

def peptide_start
  @peptide_start
end

#uknown1 ⇒ Object

Returns the value of attribute uknown1

Returns:

  • (Object) —

    the current value of uknown1



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# File 'lib/ms/mascot/dat/peptides.rb', line 112

def uknown1
  @uknown1
end

#unknown4 ⇒ Object

Returns the value of attribute unknown4

Returns:

  • (Object) —

    the current value of unknown4



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# File 'lib/ms/mascot/dat/peptides.rb', line 112

def unknown4
  @unknown4
end