Module: Mspire::Mzml::DataArrayContainerLike

Includes:
CV::Paramable
Included in:
Chromatogram, Spectrum
Defined in:
lib/mspire/mzml/data_array_container_like.rb

Instance Attribute Summary collapse

Attributes included from CV::Paramable

#cv_params, #ref_param_groups, #user_params

Instance Method Summary collapse

Methods included from CV::Paramable

#accessionable_params, #describe!, #describe_from_xml!, #describe_many!, #describe_self_from_xml!, #each_accessionable_param, #each_param, #fetch, #fetch_by_accession, #initialize, #param?, #param_by_accession, #params, #params?, #to_xml

Instance Attribute Details

#data_arrays ⇒ Object

(optional) an array of Mspire::Mzml::DataArray



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# File 'lib/mspire/mzml/data_array_container_like.rb', line 27

def data_arrays
  @data_arrays
end

#data_processing ⇒ Object

(optional) an Mspire::Mzml::DataProcessing object



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# File 'lib/mspire/mzml/data_array_container_like.rb', line 20

def data_processing
  @data_processing
end

#id ⇒ Object

(required) the spectrum id matching this general pattern: S+=S+( S+=S+)*)



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# File 'lib/mspire/mzml/data_array_container_like.rb', line 14

def id
  @id
end

#index ⇒ Object

(required [at xml write time]) the index in the spectrum list



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# File 'lib/mspire/mzml/data_array_container_like.rb', line 17

def index
  @index
end

Instance Method Details

#data_array_xml_atts(default_ids) ⇒ Object

returns a hash with id, index, defaultArrayLength and the proper dataProcessing attributes filled out.



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# File 'lib/mspire/mzml/data_array_container_like.rb', line 43

def data_array_xml_atts(default_ids)
  atts = {id: @id, index: @index, defaultArrayLength: default_array_length}
  if @data_processing && default_ids[:data_processing] != @data_processing.id 
    atts[:dataProcessingRef] = @data_processing.id 
  end
  atts
end

#default_array_length ⇒ Object 



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# File 'lib/mspire/mzml/data_array_container_like.rb', line 29

def default_array_length
  if @data_arrays
    if @data_arrays.first
      @data_arrays.first.size
    else
      0
    end
  else
    0
  end
end