Method List
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#[] Bio::Velvet::Underground::BinarySequenceStore
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#[] Bio::Velvet::Underground::Graph::NodeArray
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attach_runner_functions Bio::Velvet::Underground
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attach_shared_library Bio::Velvet::Underground
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compilation_max_kmer Bio::Velvet::Underground
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#coverages Bio::Velvet::Underground::Graph::Node
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#direction Bio::Velvet::Underground::Graph::NodedRead
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#each Bio::Velvet::Underground::Graph::NodeArray
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#ends_of_kmers_of_node Bio::Velvet::Underground::Graph::Node
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#ends_of_kmers_of_twin_node Bio::Velvet::Underground::Graph::Node
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#fwd_short_reads Bio::Velvet::Underground::Graph::Node
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#get_arcs_by_node_id Bio::Velvet::Underground::Graph::ArcArray
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#hash_length Bio::Velvet::Underground::Graph
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#initialize Bio::Velvet::Underground::Graph::NodeArray
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#initialize Bio::Velvet::Underground::BinarySequenceStore
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#initialize Bio::Velvet::Underground::Graph
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#initialize Bio::Velvet::Underground::Graph::Node
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#initialize Bio::Velvet::Underground::Graph::NodedRead
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#initialize Bio::Velvet::Underground::Graph::ArcArray
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#internal_graph_struct Bio::Velvet::Underground::Graph
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#internal_node_struct Bio::Velvet::Underground::Graph::Node
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#is_second_in_pair? Bio::Velvet::Underground::BinarySequenceStore
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#length Bio::Velvet::Underground::Graph::NodeArray
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#length Bio::Velvet::Underground::BinarySequenceStore
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#length_alone Bio::Velvet::Underground::Graph::Node
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library_location_of Bio::Velvet::Underground
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log Bio::Velvet::Underground
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#log Bio::Velvet::UndergroundLogging
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max_kmers Bio::Velvet::Underground
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#node_count Bio::Velvet::Underground::Graph
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#node_id Bio::Velvet::Underground::Graph::Node
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#nodes Bio::Velvet::Underground::Graph
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#offset_from_start_of_node Bio::Velvet::Underground::Graph::NodedRead
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#pair_id Bio::Velvet::Underground::BinarySequenceStore
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parse_from_file Bio::Velvet::Underground::Graph
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#read_id Bio::Velvet::Underground::Graph::NodedRead
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#rev_short_reads Bio::Velvet::Underground::Graph::Node
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run Bio::Velvet::Underground::Runner
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#short_reads Bio::Velvet::Underground::Graph::Node
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#start_coord Bio::Velvet::Underground::Graph::NodedRead
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#twin Bio::Velvet::Underground::Graph::Node