Method List
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#add_orf Sequence
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#add_region TestCode
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#analiza_orf_y_fl FlAnalysis
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#annotate Sequence
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#annotation_stats FlnStats
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#calcParam TestCode
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#change_degenerated_nt! Sequence
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#chimera_stats FlnStats
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#closing_worker MyWorker
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#compare_regions TestCode
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#compare_regions_old TestCode
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#complementary_dna String
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#contenidos_en_prot CommonFunctions
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#corrige_frame CommonFunctions
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#countBases TestCode
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#determine_status FlAnalysis
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end_work_manager MyWorkerManager
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#error_log FlAnalysis
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#error_received MyWorkerManager
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#fasta_length Sequence
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#final_hit UneLosHit
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#find_end FlAnalysis
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#find_nc_rna NcRna
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#find_start FlAnalysis
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#fix_degenerated_fasta! Sequence
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#frame Orf
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#full_lenghter2 MyWorker
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#full_prot UneLosHit
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#generate_orf_old String
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#generate_uncomplete_orf TestCode
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#getConclusion TestCode
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#get_annotations Sequence
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#hits_misma_id UneLosHit
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#html_code FlnStats
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init_work_manager MyWorkerManager
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#initialize Sequence
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#initialize Orf
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#initialize UneLosHit
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#initialize TestCode
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#is_ok UneLosHit
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#lcs String
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#msgs UneLosHit
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#ncrna_stats FlnStats
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#next_work MyWorkerManager
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#number_x UneLosHit
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#orf_finder_old String
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#orf_fusion TestCode
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#orfs Sequence
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#output_seq UneLosHit
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#overlapped_hits UneLosHit
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#overlaps? Orf
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#print_annotations FlAnalysis
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#print_nt_seqs FlAnalysis
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#process_object MyWorker
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#q_index_start UneLosHit
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#receive_initial_config MyWorker
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#reject! Sequence
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#rejected? Sequence
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#reverse_seq CommonFunctions
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#run_blast MyWorker
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#same_frame_hits UneLosHit
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#same_hit UneLosHit
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#save_last_db_annotations FlAnalysis
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#score Orf
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#search_chimeras ChimericSeqs
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#sec_desc Sequence
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#select_best_blast ChimericSeqs
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#separated_hits UneLosHit
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#seq Orf
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#seq_fasta Sequence
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#seq_name Sequence
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#seq_qual Sequence
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#starting_worker MyWorker
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#status Orf
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#stop_codon Orf
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#summary_stats FlnStats
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#t_code TestCode
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#t_code_old TestCode
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#t_end Orf
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#t_start Orf
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#testCode_exec TestCode
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#test_blast_hits FlAnalysis
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#test_final_hit FlAnalysis
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#testcode_stats FlnStats
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#too_many_errors_received MyWorkerManager
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#translate String
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#type Orf
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#type_fusion TestCode
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#uncomplete_orf_finder TestCode
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#useContParam TestCode
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#usePosParam TestCode
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#window_walking TestCode
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#work_received MyWorkerManager
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#worker_initial_config MyWorkerManager
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#write_seq MyWorkerManager
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#wrong_seq UneLosHit