Method List
Search:
-
#== Rubabel::Molecule
-
[] Rubabel
-
[] Rubabel::Atom
-
#[] Rubabel::MoleculeData
-
#[]= Rubabel::MoleculeData
-
#add_atom! Rubabel::Molecule
-
#add_atom! Rubabel::Atom
-
#add_bond! Rubabel::Molecule
-
#add_h! Rubabel::Molecule
-
#add_opts! OpenBabel::OBConversion
-
#add_polar_h! Rubabel::Molecule
-
#alcohol_to_aldehyde Rubabel::Molecule::Fragmentable
-
#allowable_fragment_sets! Rubabel::Molecule::Fragmentable
-
#allowable_fragmentation? Rubabel::Molecule::Fragmentable
-
#amide_nitrogen? Rubabel::Atom
-
#anti_clockwise? Rubabel::Atom
-
#aromatic? Rubabel::Atom
-
#aromatic_noxide? Rubabel::Atom
-
#atomic_mass Rubabel::Atom
-
#atomic_num Rubabel::Atom
-
#atoms Rubabel::Atom
-
#atoms Rubabel::Bond
-
#atoms Rubabel::Molecule
-
#axial? Rubabel::Atom
-
#bond_order Rubabel::Bond
-
#bond_order= Rubabel::Bond
-
#bonds Rubabel::Molecule
-
#bonds Rubabel::Atom
-
#carbon? Rubabel::Atom
-
#carboxyl_carbon? Rubabel::Atom
-
#carboxyl_oxygen? Rubabel::Atom
-
#center! Rubabel::Molecule
-
#charge Rubabel::Molecule
-
#charge= Rubabel::Molecule
-
#chiral? Rubabel::Atom
-
#chiral_volume? Rubabel::Atom
-
#chirality_specified? Rubabel::Atom
-
#clockwise? Rubabel::Atom
-
#co2_loss Rubabel::Molecule::Fragmentable
-
#connected? Rubabel::Atom
-
#convert_dative_bonds! Rubabel::Molecule
-
#coords Rubabel::Atom
-
#correct_for_ph! Rubabel::Molecule
-
#csmiles Rubabel::Molecule
-
#data Rubabel::Molecule
-
#delete Rubabel::MoleculeData
-
#delete Rubabel::Molecule
-
#delete_and_restore_bonds Rubabel::Molecule
-
#delete_atom Rubabel::Molecule
-
#delete_bond Rubabel::Molecule
-
#dim Rubabel::Molecule
-
#each Rubabel::MoleculeData
-
#each_atom Rubabel::Molecule
-
#each_atom Rubabel::Atom
-
#each_atom Rubabel::Bond
-
#each_bond Rubabel::Atom
-
#each_bond Rubabel::Molecule
-
#each_match Rubabel::Molecule
-
#el Rubabel::Atom
-
#electrophile_snatches_electrons Rubabel::Molecule::Fragmentable
-
#element Rubabel::Atom
-
#exact_mass Rubabel::Atom
-
#exact_mass Rubabel::Molecule
-
#feint_double_bond Rubabel::Molecule::Fragmentable
-
#feint_e_transfer Rubabel::Molecule::Fragmentable
-
force_field Rubabel
-
foreach Rubabel
-
#formal_charge Rubabel::Atom
-
#formal_charge= Rubabel::Atom
-
format_from_ext Rubabel
-
format_from_mime Rubabel
-
formats_to_hash Rubabel
-
#formula Rubabel::Molecule
-
#fragment Rubabel::Molecule::Fragmentable
-
from_atoms_and_bonds Rubabel::Molecule
-
from_file Rubabel::Molecule
-
from_string Rubabel::Molecule
-
#get_bond Rubabel::Atom
-
#graph_diameter Rubabel::Molecule
-
#hbond_acceptor? Rubabel::Atom
-
#hbond_donor? Rubabel::Atom
-
#hbond_donor_h? Rubabel::Atom
-
#heavy_valence Rubabel::Atom
-
#hetero_valence Rubabel::Atom
-
#heteroatom? Rubabel::Atom
-
#highlight_substructure! Rubabel::Molecule
-
#hyb Rubabel::Atom
-
#hydrogen? Rubabel::Atom
-
#hydrogens_added? Rubabel::Molecule
-
#id Rubabel::Atom
-
#id= Rubabel::Atom
-
#idx Rubabel::Atom
-
#implicit_valence Rubabel::Atom
-
in_formats Rubabel
-
#in_ring? Rubabel::Atom
-
#in_ring_size? Rubabel::Atom
-
#include? Rubabel::Bond
-
#index_by Enumerable
-
#initialize Rubabel::Molecule
-
#initialize Rubabel::Bond
-
#initialize Rubabel::MoleculeData
-
#initialize Rubabel::Smarts
-
#initialize Rubabel::Atom
-
#initialize_copy Rubabel::Molecule
-
#inspect Rubabel::Bond
-
#inspect Rubabel::Smarts
-
#inspect Rubabel::Molecule
-
#inspect Rubabel::Atom
-
#isotope Rubabel::Atom
-
#kekulize! Rubabel::Molecule
-
#key? Rubabel::MoleculeData
-
#keys Rubabel::MoleculeData
-
#local_optimize! Rubabel::Molecule
-
#make_3d! Rubabel::Molecule
-
#mass Rubabel::Molecule
-
#matches Rubabel::Molecule
-
#matches? Rubabel::Molecule
-
#mol Rubabel::Atom
-
#mol_wt Rubabel::Molecule
-
molecule_from_file Rubabel
-
molecule_from_string Rubabel
-
#near_side_double_bond_break Rubabel::Molecule::Fragmentable
-
#negative_stereo? Rubabel::Atom
-
#neutral! Rubabel::Molecule
-
#nitro_oxygen? Rubabel::Atom
-
#nitrogen? Rubabel::Atom
-
#non_polar_hydrogen? Rubabel::Atom
-
#not_c_or_h? Rubabel::Atom
-
#num_atoms Rubabel::Molecule
-
#num_bonds Rubabel::Molecule
-
#num_hvy_atoms Rubabel::Molecule
-
#num_residues Rubabel::Molecule
-
#num_rotors Rubabel::Molecule
-
#ob Rubabel::Molecule
-
#ob Rubabel::Smarts
-
#ob Rubabel::Bond
-
#ob Rubabel::Atom
-
#ob_fingerprint Rubabel::Molecule
-
#ob_sssr Rubabel::Molecule
-
#obmol Rubabel::MoleculeData
-
#one_four? Rubabel::Atom
-
#one_three? Rubabel::Atom
-
out_formats Rubabel
-
#oxygen? Rubabel::Atom
-
#pair_data Rubabel::MoleculeData
-
#partial_charge Rubabel::Atom
-
#peroxy_to_carboxy Rubabel::Molecule::Fragmentable
-
#phosphate_oxygen? Rubabel::Atom
-
#phosphorus? Rubabel::Atom
-
#pm Object
-
#png_transformer Rubabel::Molecule
-
#polar_hydrogen? Rubabel::Atom
-
#positive_stereo? Rubabel::Atom
-
#putsev Top Level Namespace
-
#putsv Top Level Namespace
-
read_first_obmol Rubabel
-
#remove_h! Rubabel::Molecule
-
#separate! Rubabel::Molecule
-
#size Rubabel::MoleculeData
-
#smarts_indices Rubabel::Molecule
-
#smiles Rubabel::Molecule
-
#spin Rubabel::Atom
-
#spin Rubabel::Molecule
-
#split Rubabel::Molecule
-
#strip_salts! Rubabel::Molecule
-
#sulfate_oxygen? Rubabel::Atom
-
#sulfur? Rubabel::Atom
-
#swap! Rubabel::Molecule
-
#tanimoto Rubabel::Molecule
-
tanimoto Rubabel::Molecule
-
#title Rubabel::Molecule
-
#title= Rubabel::Molecule
-
#to_a Rubabel::MoleculeData
-
#to_s Rubabel::Molecule
-
#to_s Rubabel::Smarts
-
#type Rubabel::Atom
-
#uniq_by Enumerable
-
#upcast OpenBabel::OBAtom
-
#upcast OpenBabel::OBBond
-
#upcast OpenBabel::OBMol
-
#valence Rubabel::Atom
-
#values Rubabel::MoleculeData
-
#vector Rubabel::Atom
-
#write Rubabel::Molecule
-
#write_file Rubabel::Molecule
-
#write_string Rubabel::Molecule