Module: BELParser::Language::AminoAcid

Defined in:
lib/bel_parser/language/amino_acid.rb

Overview

AminoAcid defines a controlled vocabulary of twenty Amino Acids that are encoded by the universal genetic code. It does not contain the additional Amino Acids incorporated into proteins by synthetic means.

see en.wikipedia.org/wiki/Amino_acid

Constant Summary collapse

Alanine = 
[:Alanine, :A, :Ala].freeze
Arginine = 
[:Arginine, :R, :Arg].freeze
Asparagine = 
[:Asparagine, :N, :Asn].freeze
AsparticAcid = 
[:'Aspartic Acid', :D, :Asp].freeze
Cysteine = 
[:Cysteine, :C, :Cys].freeze
GlutamicAcid = 
[:'Glutamic Acid', :E, :Glu].freeze
Glutamine = 
[:Glutamine, :Q, :Gln].freeze
Glycine = 
[:Glycine, :G, :Gly].freeze
Histidine = 
[:Histidine, :H, :His].freeze
Isoleucine = 
[:Isoleucine, :I, :Ile].freeze
Leucine = 
[:Leucine, :L, :Leu].freeze
Lysine = 
[:Lysine, :K, :Lys].freeze
Methionine = 
[:Methionine, :M, :Met].freeze
Phenylalanine = 
[:Phenylalanine, :F, :Phe].freeze
Proline = 
[:Proline, :P, :Pro].freeze
Serine = 
[:Serine, :S, :Ser].freeze
Threonine = 
[:Threonine, :T, :Thr].freeze
Tryptophan = 
[:Tryptophan, :W, :Trp].freeze
Tyrosine = 
[:Tyrosine, :Y, :Tyr].freeze
Valine = 
[:Valine, :V, :Val].freeze

Class Method Summary collapse

Class Method Details

.includes?(sym) ⇒ Boolean

Determines if sym represents an amino acid code.

supported amino acids; false if not supported

Parameters:

  • sym (#to_sym) —

    amino acid code

Returns:

  • (Boolean) —

    true if sym amino acid code is included in



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# File 'lib/bel_parser/language/amino_acid.rb', line 35

def self.includes?(sym)
  @hash.key?(sym.to_sym)
end

.names ⇒ Object

Gets all supported amino acid names.



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# File 'lib/bel_parser/language/amino_acid.rb', line 40

def self.names
  @names
end

.values ⇒ Object

Gets all supported amino acid codes (i.e. name, 1-Letter, 3-Letter).



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# File 'lib/bel_parser/language/amino_acid.rb', line 45

def self.values
  @values
end