Module: BELParser::Language::Version1_0

Defined in:

lib/bel_parser/language/version1_0.rb,
lib/bel_parser/language/version1_0/functions/list.rb,
lib/bel_parser/language/version1_0/functions/fusion.rb,
lib/bel_parser/language/version1_0/return_types/any.rb,
lib/bel_parser/language/version1_0/return_types/list.rb,
lib/bel_parser/language/version1_0/functions/products.rb,
lib/bel_parser/language/version1_0/functions/reaction.rb,
lib/bel_parser/language/version1_0/relationships/is_a.rb,
lib/bel_parser/language/version1_0/functions/abundance.rb,
lib/bel_parser/language/version1_0/functions/pathology.rb,
lib/bel_parser/language/version1_0/functions/reactants.rb,
lib/bel_parser/language/version1_0/return_types/fusion.rb,
lib/bel_parser/language/version1_0/value_encodings/any.rb,
lib/bel_parser/language/version1_0/functions/truncation.rb,
lib/bel_parser/language/version1_0/functions/degradation.rb,
lib/bel_parser/language/version1_0/relationships/acts_in.rb,
lib/bel_parser/language/version1_0/return_types/products.rb,
lib/bel_parser/language/version1_0/functions/substitution.rb,
lib/bel_parser/language/version1_0/relationships/includes.rb,
lib/bel_parser/language/version1_0/return_types/abundance.rb,
lib/bel_parser/language/version1_0/return_types/pathology.rb,
lib/bel_parser/language/version1_0/return_types/reactants.rb,
lib/bel_parser/language/version1_0/functions/rna_abundance.rb,
lib/bel_parser/language/version1_0/functions/translocation.rb,
lib/bel_parser/language/version1_0/relationships/analogous.rb,
lib/bel_parser/language/version1_0/relationships/decreases.rb,
lib/bel_parser/language/version1_0/relationships/increases.rb,
lib/bel_parser/language/version1_0/return_types/truncation.rb,
lib/bel_parser/language/version1_0/functions/cell_secretion.rb,
lib/bel_parser/language/version1_0/functions/gene_abundance.rb,
lib/bel_parser/language/version1_0/relationships/has_member.rb,
lib/bel_parser/language/version1_0/functions/kinase_activity.rb,
lib/bel_parser/language/version1_0/relationships/association.rb,
lib/bel_parser/language/version1_0/relationships/has_members.rb,
lib/bel_parser/language/version1_0/relationships/has_product.rb,
lib/bel_parser/language/version1_0/relationships/has_variant.rb,
lib/bel_parser/language/version1_0/relationships/orthologous.rb,
lib/bel_parser/language/version1_0/relationships/reactant_in.rb,
lib/bel_parser/language/version1_0/return_types/substitution.rb,
lib/bel_parser/language/version1_0/value_encodings/abundance.rb,
lib/bel_parser/language/version1_0/value_encodings/pathology.rb,
lib/bel_parser/language/version1_0/relationships/translocates.rb,
lib/bel_parser/language/version1_0/return_types/rna_abundance.rb,
lib/bel_parser/language/version1_0/functions/complex_abundance.rb,
lib/bel_parser/language/version1_0/functions/protein_abundance.rb,
lib/bel_parser/language/version1_0/relationships/biomarker_for.rb,
lib/bel_parser/language/version1_0/relationships/has_component.rb,
lib/bel_parser/language/version1_0/relationships/translated_to.rb,
lib/bel_parser/language/version1_0/return_types/gene_abundance.rb,
lib/bel_parser/language/version1_0/functions/biological_process.rb,
lib/bel_parser/language/version1_0/functions/catalytic_activity.rb,
lib/bel_parser/language/version1_0/functions/chaperone_activity.rb,
lib/bel_parser/language/version1_0/functions/gtp_bound_activity.rb,
lib/bel_parser/language/version1_0/functions/molecular_activity.rb,
lib/bel_parser/language/version1_0/functions/peptidase_activity.rb,
lib/bel_parser/language/version1_0/functions/transport_activity.rb,
lib/bel_parser/language/version1_0/relationships/has_components.rb,
lib/bel_parser/language/version1_0/relationships/sub_process_of.rb,
lib/bel_parser/language/version1_0/relationships/transcribed_to.rb,
lib/bel_parser/language/version1_0/return_types/kinase_activity.rb,
lib/bel_parser/language/version1_0/functions/composite_abundance.rb,
lib/bel_parser/language/version1_0/functions/micro_rna_abundance.rb,
lib/bel_parser/language/version1_0/value_encodings/rna_abundance.rb,
lib/bel_parser/language/version1_0/functions/phosphatase_activity.rb,
lib/bel_parser/language/version1_0/functions/protein_modification.rb,
lib/bel_parser/language/version1_0/relationships/causes_no_change.rb,
lib/bel_parser/language/version1_0/relationships/has_modification.rb,
lib/bel_parser/language/version1_0/return_types/complex_abundance.rb,
lib/bel_parser/language/version1_0/return_types/protein_abundance.rb,
lib/bel_parser/language/version1_0/upgrades/fusion_transformation.rb,
lib/bel_parser/language/version1_0/value_encodings/gene_abundance.rb,
lib/bel_parser/language/version1_0/functions/ribosylation_activity.rb,
lib/bel_parser/language/version1_0/return_types/biological_process.rb,
lib/bel_parser/language/version1_0/return_types/catalytic_activity.rb,
lib/bel_parser/language/version1_0/return_types/chaperone_activity.rb,
lib/bel_parser/language/version1_0/return_types/gtp_bound_activity.rb,
lib/bel_parser/language/version1_0/return_types/molecular_activity.rb,
lib/bel_parser/language/version1_0/return_types/peptidase_activity.rb,
lib/bel_parser/language/version1_0/return_types/transport_activity.rb,
lib/bel_parser/language/version1_0/relationships/directly_decreases.rb,
lib/bel_parser/language/version1_0/relationships/directly_increases.rb,
lib/bel_parser/language/version1_0/return_types/micro_rna_abundance.rb,
lib/bel_parser/language/version1_0/upgrades/activity_transformation.rb,
lib/bel_parser/language/version1_0/functions/cell_surface_expression.rb,
lib/bel_parser/language/version1_0/return_types/phosphatase_activity.rb,
lib/bel_parser/language/version1_0/return_types/protein_modification.rb,
lib/bel_parser/language/version1_0/upgrades/variation_transformation.rb,
lib/bel_parser/language/version1_0/value_encodings/complex_abundance.rb,
lib/bel_parser/language/version1_0/value_encodings/protein_abundance.rb,
lib/bel_parser/language/version1_0/functions/transcriptional_activity.rb,
lib/bel_parser/language/version1_0/relationships/negative_correlation.rb,
lib/bel_parser/language/version1_0/relationships/positive_correlation.rb,
lib/bel_parser/language/version1_0/return_types/ribosylation_activity.rb,
lib/bel_parser/language/version1_0/value_encodings/biological_process.rb,
lib/bel_parser/language/version1_0/relationships/rate_limiting_step_of.rb,
lib/bel_parser/language/version1_0/value_encodings/micro_rna_abundance.rb,
lib/bel_parser/language/version1_0/return_types/transcriptional_activity.rb,
lib/bel_parser/language/version1_0/upgrades/translocation_transformation.rb,
lib/bel_parser/language/version1_0/relationships/prognostic_biomarker_for.rb,
lib/bel_parser/language/version1_0/upgrades/protein_modification_transformation.rb

Defined Under Namespace

Modules: Functions, Relationships, ReturnTypes, Upgrades, ValueEncodings Classes: Specification