Documentation for bel_parser (1.1.6)

Alphabetic Index

File Listing

README

Namespace Listing A-Z

AST (BELParser::Parsers)
AST
ASTFilter (BELParser)
ASTGenerator (BELParser)
Abundance (BELParser::Language::Version2_0::ReturnTypes)
Abundance (BELParser::Language::Version1_0::Functions)
Abundance (BELParser::Language::Version2_0::ValueEncodings)
Abundance (BELParser::Language::Version1_0::ReturnTypes)
Abundance (BELParser::Language::Version1_0::ValueEncodings)
Abundance (BELParser::Language::Version2_0::Functions)
AbundanceSignature (BELParser::Language::Version2_0::Functions::Abundance::Signatures)
AbundanceSignature (BELParser::Language::Version1_0::Functions::Abundance::Signatures)
AbundanceWithLocationSignature (BELParser::Language::Version2_0::Functions::Abundance::Signatures)
AbundanceWithMolecularActivitySignature (BELParser::Language::Version2_0::Functions::Abundance::Signatures)
Activity (BELParser::Language::Version2_0::ValueEncodings)
Activity (BELParser::Language::Version2_0::Functions)
Activity (BELParser::Language::Version2_0::ReturnTypes)
ActivitySignature (BELParser::Language::Version2_0::Functions::Activity::Signatures)
ActivityTransformation (BELParser::Language::Version1_0::Upgrades)
ActivityWithSpecificActivityTypeSignature (BELParser::Language::Version2_0::Functions::Activity::Signatures)
ActsIn (BELParser::Language::Version1_0::Relationships)
ActsIn (BELParser::Language::Version2_0::Relationships)
AllFunctionArgumentCompleter (BELParser::Completion)
AllFunctionCompleter (BELParser::Completion)
AllFunctionTermCompleter (BELParser::Completion)
AllNamespacePrefixArgumentCompleter (BELParser::Completion)
AllNamespacePrefixCompleter (BELParser::Completion)
AllRelationshipCompleter (BELParser::Completion)
AminoAcid (BELParser::Language)
Analogous (BELParser::Language::Version2_0::Relationships)
Analogous (BELParser::Language::Version1_0::Relationships)
Annotation (BELParser::Expression::Model)
AnnotationDefinition (BELParser::Parsers::AST)
AnnotationDefinition (BELParser::Script::State)
Any (BELParser::Language::Version2_0::ValueEncodings)
Any (BELParser::Language::Version2_0::ReturnTypes)
Any (BELParser::Language::Version1_0::ReturnTypes)
Any (BELParser::Language::Version1_0::ValueEncodings)
ApplyDefaultNamespace (BELParser::Language)
ApplyNamespaceEncoding (BELParser::Language)
ApplyResourceURI (BELParser::Script)
Argument (BELParser::Parsers::AST)
Association (BELParser::Language::Version2_0::Relationships)
Association (BELParser::Language::Version1_0::Relationships)

BELParser
BELScript (BELParser::Parsers)
BELVersion (BELParser::Script::State)
BaseCompleter (BELParser::Completion)
BaseSpecification (BELParser::Language)
BelCitationSerialization (BEL::Translator::Plugins::BelScript)
BelDiscreteSerialization (BEL::Translator::Plugins::BelScript)
BelScript (BEL::Translator::Plugins)
BelScriptTranslator (BEL::Translator::Plugins::BelScript)
BelTopDownSerialization (BEL::Translator::Plugins::BelScript)
BiologicalProcess (BELParser::Language::Version1_0::ValueEncodings)
BiologicalProcess (BELParser::Language::Version1_0::ReturnTypes)
BiologicalProcess (BELParser::Language::Version2_0::ReturnTypes)
BiologicalProcess (BELParser::Language::Version1_0::Functions)
BiologicalProcess (BELParser::Language::Version2_0::Functions)
BiologicalProcess (BELParser::Language::Version2_0::ValueEncodings)
BiologicalProcessSignature (BELParser::Language::Version1_0::Functions::BiologicalProcess::Signatures)
BiologicalProcessSignature (BELParser::Language::Version2_0::Functions::BiologicalProcess::Signatures)
BiomarkerFor (BELParser::Language::Version2_0::Relationships)
BiomarkerFor (BELParser::Language::Version1_0::Relationships)
BlankLine (BELParser::Parsers::Common)
BlankLine (BELParser::Parsers::AST)
Buffer (BELParser::Parsers)
Builder (BELParser::Language::Semantics)

CatalyticActivity (BELParser::Language::Version1_0::Functions)
CatalyticActivity (BELParser::Language::Version1_0::ReturnTypes)
CatalyticActivityOfComplexAbundanceSignature (BELParser::Language::Version1_0::Functions::CatalyticActivity::Signatures)
CatalyticActivityOfProteinAbundanceSignature (BELParser::Language::Version1_0::Functions::CatalyticActivity::Signatures)
CausesNoChange (BELParser::Language::Version2_0::Relationships)
CausesNoChange (BELParser::Language::Version1_0::Relationships)
CellSecretion (BELParser::Language::Version1_0::Functions)
CellSecretion (BELParser::Language::Version2_0::Functions)
CellSecretionSignature (BELParser::Language::Version1_0::Functions::CellSecretion::Signatures)
CellSecretionSignature (BELParser::Language::Version2_0::Functions::CellSecretion::Signatures)
CellSurfaceExpression (BELParser::Language::Version2_0::Functions)
CellSurfaceExpression (BELParser::Language::Version1_0::Functions)
CellSurfaceExpressionSignature (BELParser::Language::Version1_0::Functions::CellSurfaceExpression::Signatures)
CellSurfaceExpressionSignature (BELParser::Language::Version2_0::Functions::CellSurfaceExpression::Signatures)
ChaperoneActivity (BELParser::Language::Version1_0::Functions)
ChaperoneActivity (BELParser::Language::Version1_0::ReturnTypes)
ChaperoneActivityOfComplexAbundanceSignature (BELParser::Language::Version1_0::Functions::ChaperoneActivity::Signatures)
ChaperoneActivityOfProteinAbundanceSignature (BELParser::Language::Version1_0::Functions::ChaperoneActivity::Signatures)
Comment (BELParser::Parsers::AST)
Comment (BELParser::Parsers::Expression)
CommentLine (BELParser::Parsers::Common)
CommentLine (BELParser::Parsers::AST)
Common (BELParser::Parsers)
Completion (BELParser)
ComplexAbundance (BELParser::Language::Version2_0::ValueEncodings)
ComplexAbundance (BELParser::Language::Version2_0::ReturnTypes)
ComplexAbundance (BELParser::Language::Version2_0::Functions)
ComplexAbundance (BELParser::Language::Version1_0::Functions)
ComplexAbundance (BELParser::Language::Version1_0::ReturnTypes)
ComplexAbundance (BELParser::Language::Version1_0::ValueEncodings)
ComposedComplexAbundanceSignature (BELParser::Language::Version1_0::Functions::ComplexAbundance::Signatures)
ComposedComplexAbundanceSignature (BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures)
ComposedComplexAbundanceWithLocationSignature (BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures)
CompositeAbundance (BELParser::Language::Version1_0::Functions)
CompositeAbundance (BELParser::Language::Version2_0::Functions)
CompositeAbundanceSignature (BELParser::Language::Version1_0::Functions::CompositeAbundance::Signatures)
CompositeAbundanceSignature (BELParser::Language::Version2_0::Functions::CompositeAbundance::Signatures)
Concept (BELParser::Resource)
Concept (BELParser::Resource::JenaTDBReader)
ConceptScheme (BELParser::Resource)
ConceptScheme (BELParser::Resource::JenaTDBReader)
Converters (BELParser::Expression::Model)
CovalentProteinModification (BELParser::Language)

Dataset (BELParser::Resource)
Decreases (BELParser::Language::Version1_0::Relationships)
Decreases (BELParser::Language::Version2_0::Relationships)
DeeplyNestedStatement (BELParser::Language::Semantics)
DeeplyNestedStatementWarning (BELParser::Language::Semantics)
DefineAnnotation (BELParser::Parsers::BELScript)
DefineNamespace (BELParser::Parsers::BELScript)
Degradation (BELParser::Language::Version1_0::Functions)
Degradation (BELParser::Language::Version2_0::Functions)
DegradationSignature (BELParser::Language::Version1_0::Functions::Degradation::Signatures)
DegradationSignature (BELParser::Language::Version2_0::Functions::Degradation::Signatures)
DirectlyDecreases (BELParser::Language::Version2_0::Relationships)
DirectlyDecreases (BELParser::Language::Version1_0::Relationships)
DirectlyIncreases (BELParser::Language::Version2_0::Relationships)
DirectlyIncreases (BELParser::Language::Version1_0::Relationships)
DocumentProperty (BELParser::Parsers::AST)
DocumentProperty (BELParser::Script::State)
Domain (BELParser::Parsers::AST)

EagerReader (BELParser::Resource)
EagerSPARQLReader (BELParser::Resource)
ExactMatchParameterCompleter (BELParser::Completion)
Expression (BELParser::Parsers)
Expression (BELParser)
ExpressionValidation (BELParser::Script::Syntax)
ExpressionValidator (BELParser::Language)

FileResource (BELParser::Resource)
FileResourceValue (BELParser::Resource)
Filter (BELParser::Expression)
Filter (BELParser::Script)
FirstNode (BELParser::Script)
Fragment (BELParser::Language::Version2_0::ReturnTypes)
Fragment (BELParser::Language::Version2_0::Functions)
FragmentWithAnyDescriptorSignature (BELParser::Language::Version2_0::Functions::Fragment::Signatures)
FragmentWithAnySignature (BELParser::Language::Version2_0::Functions::Fragment::Signatures)
FragmentWithRangeDescriptorSignature (BELParser::Language::Version2_0::Functions::Fragment::Signatures)
FragmentWithRangeSignature (BELParser::Language::Version2_0::Functions::Fragment::Signatures)
FromLocation (BELParser::Language::Version2_0::ReturnTypes)
FromLocation (BELParser::Language::Version2_0::Functions)
FromLocationAnySignature (BELParser::Language::Version2_0::Functions::FromLocation::Signatures)
FromLocationSignature (BELParser::Language::Version2_0::Functions::FromLocation::Signatures)
Function (BELParser::Parsers::Common)
Function (BELParser::Language)
Function (BELParser::Parsers::AST)
FunctionArgumentCompleter (BELParser::Completion)
FunctionCompleter (BELParser::Completion)
FunctionDeprecation (BELParser::Language::Semantics)
FunctionDeprecationWarning (BELParser::Language::Semantics)
FunctionTermCompleter (BELParser::Completion)
Functions (BELParser::Language::Version2_0)
Functions (BELParser::Language::Version1_0)
Fusion (BELParser::Language::Version2_0::Functions)
Fusion (BELParser::Language::Version1_0::Functions)
Fusion (BELParser::Language::Version2_0::ReturnTypes)
Fusion (BELParser::Language::Version1_0::ReturnTypes)
FusionGeneAbundanceSignature (BELParser::Language::Version1_0::Functions::Fusion::Signatures)
FusionGeneAbundanceWithBreakpointsSignature (BELParser::Language::Version1_0::Functions::Fusion::Signatures)
FusionProteinAbundanceSignature (BELParser::Language::Version1_0::Functions::Fusion::Signatures)
FusionProteinAbundanceWithBreakpointsSignature (BELParser::Language::Version1_0::Functions::Fusion::Signatures)
FusionRNAAbundanceSignature (BELParser::Language::Version1_0::Functions::Fusion::Signatures)
FusionRNAAbundanceWithBreakpointsSignature (BELParser::Language::Version1_0::Functions::Fusion::Signatures)
FusionTransformation (BELParser::Language::Version1_0::Upgrades)
FusionWithGeneEncodingSignature (BELParser::Language::Version2_0::Functions::Fusion::Signatures)
FusionWithProteinEncodingSignature (BELParser::Language::Version2_0::Functions::Fusion::Signatures)
FusionWithRNAEncodingSignature (BELParser::Language::Version2_0::Functions::Fusion::Signatures)

GTPBoundActivity (BELParser::Language::Version1_0::ReturnTypes)
GTPBoundActivity (BELParser::Language::Version1_0::Functions)
GTPBoundActivityOfComplexAbundanceSignature (BELParser::Language::Version1_0::Functions::GTPBoundActivity::Signatures)
GTPBoundActivityOfProteinAbundanceSignature (BELParser::Language::Version1_0::Functions::GTPBoundActivity::Signatures)
GeneAbundance (BELParser::Language::Version2_0::Functions)
GeneAbundance (BELParser::Language::Version2_0::ValueEncodings)
GeneAbundance (BELParser::Language::Version1_0::Functions)
GeneAbundance (BELParser::Language::Version1_0::ValueEncodings)
GeneAbundance (BELParser::Language::Version2_0::ReturnTypes)
GeneAbundance (BELParser::Language::Version1_0::ReturnTypes)
GeneAbundanceSignature (BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures)
GeneAbundanceSignature (BELParser::Language::Version1_0::Functions::GeneAbundance::Signatures)
GeneAbundanceWithFusionSignature (BELParser::Language::Version1_0::Functions::GeneAbundance::Signatures)
GeneAbundanceWithFusionSignature (BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures)
GeneAbundanceWithLocationSignature (BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures)
GeneAbundanceWithVariantSignature (BELParser::Language::Version2_0::Functions::GeneAbundance::Signatures)

HasComponent (BELParser::Language::Version1_0::Relationships)
HasComponent (BELParser::Language::Version2_0::Relationships)
HasComponents (BELParser::Language::Version1_0::Relationships)
HasComponents (BELParser::Language::Version2_0::Relationships)
HasMember (BELParser::Language::Version2_0::Relationships)
HasMember (BELParser::Language::Version1_0::Relationships)
HasMembers (BELParser::Language::Version1_0::Relationships)
HasMembers (BELParser::Language::Version2_0::Relationships)
HasModification (BELParser::Language::Version2_0::Relationships)
HasModification (BELParser::Language::Version1_0::Relationships)
HasProduct (BELParser::Language::Version1_0::Relationships)
HasProduct (BELParser::Language::Version2_0::Relationships)
HasVariant (BELParser::Language::Version2_0::Relationships)
HasVariant (BELParser::Language::Version1_0::Relationships)

Identifier (BELParser::Parsers::Common)
Identifier (BELParser::Parsers::AST)
Includes (BELParser::Language::Version1_0::Relationships)
Includes (BELParser::Language::Version2_0::Relationships)
Increases (BELParser::Language::Version2_0::Relationships)
Increases (BELParser::Language::Version1_0::Relationships)
InvalidFunction (BELParser::Language::Syntax)
InvalidFunctionSyntaxError (BELParser::Language::Syntax)
InvalidRegexPattern (BELParser::Script::Syntax)
InvalidRegexPatternError (BELParser::Script::Syntax)
InvalidRelationship (BELParser::Language::Syntax)
InvalidRelationshipSyntaxError (BELParser::Language::Syntax)
IsA (BELParser::Language::Version2_0::Relationships)
IsA (BELParser::Language::Version1_0::Relationships)

JenaTDBReader (BELParser::Resource)

Keyword (BELParser::Script)
Keyword (BELParser::Parsers::AST)
KinaseActivity (BELParser::Language::Version1_0::ReturnTypes)
KinaseActivity (BELParser::Language::Version1_0::Functions)
KinaseActivityOfComplexAbundanceSignature (BELParser::Language::Version1_0::Functions::KinaseActivity::Signatures)
KinaseActivityOfProteinAbundanceSignature (BELParser::Language::Version1_0::Functions::KinaseActivity::Signatures)

LINE
LRUCache (BELParser::Resource)
LRUReader (BELParser::Resource)
Language (BELParser)
Levenshtein (BELParser)
LineMapping (BELParser)
List (BELParser::Language::Version1_0::Functions)
List (BELParser::Language::Version2_0::Functions)
List (BELParser::Parsers::Common)
List (BELParser::Parsers::AST)
List (BELParser::Language::Version1_0::ReturnTypes)
List (BELParser::Language::Version2_0::ReturnTypes)
ListFunctionSubject (BELParser::Language::Semantics)
ListFunctionSubjectWarning (BELParser::Language::Semantics)
ListItem (BELParser::Parsers::AST)
ListOfAbundanceEncodingSignature (BELParser::Language::Version1_0::Functions::List::Signatures)
ListOfAbundanceEncodingSignature (BELParser::Language::Version2_0::Functions::List::Signatures)
ListOfAbundanceSignature (BELParser::Language::Version2_0::Functions::List::Signatures)
ListOfAbundanceSignature (BELParser::Language::Version1_0::Functions::List::Signatures)
Location (BELParser::Language::Version2_0::ValueEncodings)
Location (BELParser::Language::Version2_0::ReturnTypes)
Location (BELParser::Language::Version2_0::Functions)
LocationAnySignature (BELParser::Language::Version2_0::Functions::Location::Signatures)
LocationSignature (BELParser::Language::Version2_0::Functions::Location::Signatures)

MergeCompletion (BELParser::Completion)
MicroRNAAbundance (BELParser::Language::Version2_0::ValueEncodings)
MicroRNAAbundance (BELParser::Language::Version2_0::ReturnTypes)
MicroRNAAbundance (BELParser::Language::Version1_0::ReturnTypes)
MicroRNAAbundance (BELParser::Language::Version1_0::ValueEncodings)
MicroRNAAbundance (BELParser::Language::Version2_0::Functions)
MicroRNAAbundance (BELParser::Language::Version1_0::Functions)
MicroRNAAbundanceSignature (BELParser::Language::Version2_0::Functions::MicroRNAAbundance::Signatures)
MicroRNAAbundanceSignature (BELParser::Language::Version1_0::Functions::MicroRNAAbundance::Signatures)
MicroRNAAbundanceWithLocationSignature (BELParser::Language::Version2_0::Functions::MicroRNAAbundance::Signatures)
MicroRNAAbundanceWithVariantSignature (BELParser::Language::Version2_0::Functions::MicroRNAAbundance::Signatures)
Mixin (AST::Processor)
Model (BELParser::Expression)
MolecularActivity (BELParser::Language::Version1_0::Functions)
MolecularActivity (BELParser::Language::Version1_0::ReturnTypes)
MolecularActivity (BELParser::Language::Version2_0::Functions)
MolecularActivity (BELParser::Language::Version2_0::ReturnTypes)
MolecularActivityAnySignature (BELParser::Language::Version2_0::Functions::MolecularActivity::Signatures)
MolecularActivityOfAbundanceSignature (BELParser::Language::Version1_0::Functions::MolecularActivity::Signatures)
MolecularActivitySignature (BELParser::Language::Version2_0::Functions::MolecularActivity::Signatures)
MultiIdentifier (BELParser::Parsers::Common)
MultiIdentifier (BELParser::Parsers::AST)
MultipleSubjectObject (BELParser::Language::Semantics)
MultipleSubjectObjectWarning (BELParser::Language::Semantics)

Name (BELParser::Parsers::AST)
NamedComplexAbundanceSignature (BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures)
NamedComplexAbundanceSignature (BELParser::Language::Version1_0::Functions::ComplexAbundance::Signatures)
NamedComplexAbundanceWithLocationSignature (BELParser::Language::Version2_0::Functions::ComplexAbundance::Signatures)
Namespace (BELParser::Expression::Model)
NamespaceDefinition (BELParser::Script::State)
NamespaceDefinition (BELParser::Parsers::AST)
NamespacePrefixArgumentCompleter (BELParser::Completion)
NamespacePrefixCompleter (BELParser::Completion)
NanopubMapper (BELParser::Script)
NanopubSerialization (BEL::Translator::Plugins::BelScript)
NegativeCorrelation (BELParser::Language::Version2_0::Relationships)
NegativeCorrelation (BELParser::Language::Version1_0::Relationships)
NestedStatement (BELParser::Parsers::Expression)
NestedStatement (BELParser::Parsers::AST)
NestedStatementResult (BELParser::Language::ExpressionValidator)
NestedStatementWithoutObject (BELParser::Language::Semantics)
NestedStatementWithoutObjectWarning (BELParser::Language::Semantics)
Node (AST)
Node (BELParser::Parsers::AST)
NonCausalNestedStatement (BELParser::Language::Semantics)
NonCausalNestedStatementWarning (BELParser::Language::Semantics)
NonObjectList (BELParser::Language::Semantics)
NonObjectListWarning (BELParser::Language::Semantics)
NonblockingIOWrapper

Object (BELParser::Parsers::AST)
ObservedTerm (BELParser::Parsers::AST)
ObservedTerm (BELParser::Parsers::Expression)
ObservedTermResult (BELParser::Language::ExpressionValidator)
Orthologous (BELParser::Language::Version1_0::Relationships)
Orthologous (BELParser::Language::Version2_0::Relationships)

Parameter (BELParser::Expression::Model)
Parameter (BELParser::Parsers::Expression)
Parameter (BELParser::Parsers::AST)
ParameterResult (BELParser::Language::ExpressionValidator)
Parser (BELParser::Parsers::Expression::StatementAutocomplete)
Parser (BELParser::Parsers::BELScript::DefineAnnotation)
Parser (BELParser::Parsers::BELScript::DefineNamespace)
Parser (BELParser::Parsers::Expression::NestedStatement)
Parser (BELParser::Parsers::Expression::SimpleStatement)
Parser (BELParser::Parsers::Expression::ObservedTerm)
Parser (BELParser::Parsers::Expression::Relationship)
Parser (BELParser::Parsers::Common::MultiIdentifier)
Parser (BELParser::Parsers::Expression::Comment)
Parser (BELParser::Parsers::Common::CommentLine)
Parser (BELParser::Parsers::BELScript::SetDocument)
Parser (BELParser::Parsers::Common::BlankLine)
Parser (BELParser::Parsers::Common::Identifier)
Parser (BELParser::Parsers::Expression::Parameter)
Parser (BELParser::Parsers::Expression::Term)
Parser (BELParser::Parsers::Common::Function)
Parser (BELParser::Parsers::BELScript::Set)
Parser (BELParser::Parsers::BELScript::Unset)
Parser (BELParser::Parsers::Common::String)
Parser (BELParser::Parsers::Common::List)
Parser (BELParser::Expression)
Parser (BELParser::Script)
Parsers (BELParser)
Pathology (BELParser::Language::Version2_0::ReturnTypes)
Pathology (BELParser::Language::Version1_0::ReturnTypes)
Pathology (BELParser::Language::Version1_0::ValueEncodings)
Pathology (BELParser::Language::Version2_0::ValueEncodings)
Pathology (BELParser::Language::Version2_0::Functions)
Pathology (BELParser::Language::Version1_0::Functions)
PathologySignature (BELParser::Language::Version2_0::Functions::Pathology::Signatures)
PathologySignature (BELParser::Language::Version1_0::Functions::Pathology::Signatures)
Pattern (BELParser::Parsers::AST)
PeptidaseActivity (BELParser::Language::Version1_0::Functions)
PeptidaseActivity (BELParser::Language::Version1_0::ReturnTypes)
PeptidaseActivityOfComplexAbundanceSignature (BELParser::Language::Version1_0::Functions::PeptidaseActivity::Signatures)
PeptidaseActivityOfProteinAbundanceSignature (BELParser::Language::Version1_0::Functions::PeptidaseActivity::Signatures)
PhosphataseActivity (BELParser::Language::Version1_0::ReturnTypes)
PhosphataseActivity (BELParser::Language::Version1_0::Functions)
PhosphataseActivityOfComplexAbundanceSignature (BELParser::Language::Version1_0::Functions::PhosphataseActivity::Signatures)
PhosphataseActivityOfProteinAbundanceSignature (BELParser::Language::Version1_0::Functions::PhosphataseActivity::Signatures)
Plugins (BEL::Translator)
PositiveCorrelation (BELParser::Language::Version2_0::Relationships)
PositiveCorrelation (BELParser::Language::Version1_0::Relationships)
Prefix (BELParser::Parsers::AST)
Processor (AST)
Products (BELParser::Language::Version2_0::ReturnTypes)
Products (BELParser::Language::Version1_0::ReturnTypes)
Products (BELParser::Language::Version2_0::Functions)
Products (BELParser::Language::Version1_0::Functions)
ProductsSignature (BELParser::Language::Version2_0::Functions::Products::Signatures)
ProductsSignature (BELParser::Language::Version1_0::Functions::Products::Signatures)
PrognosticBiomarkerFor (BELParser::Language::Version2_0::Relationships)
PrognosticBiomarkerFor (BELParser::Language::Version1_0::Relationships)
ProteinAbundance (BELParser::Language::Version1_0::ValueEncodings)
ProteinAbundance (BELParser::Language::Version2_0::ValueEncodings)
ProteinAbundance (BELParser::Language::Version2_0::ReturnTypes)
ProteinAbundance (BELParser::Language::Version1_0::ReturnTypes)
ProteinAbundance (BELParser::Language::Version2_0::Functions)
ProteinAbundance (BELParser::Language::Version1_0::Functions)
ProteinAbundanceSignature (BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures)
ProteinAbundanceSignature (BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures)
ProteinAbundanceWithFragmentSignature (BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures)
ProteinAbundanceWithFusionSignature (BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures)
ProteinAbundanceWithFusionSignature (BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures)
ProteinAbundanceWithLocationSignature (BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures)
ProteinAbundanceWithProteinModificationSignature (BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures)
ProteinAbundanceWithProteinModificationSignature (BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures)
ProteinAbundanceWithSubstitutionSignature (BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures)
ProteinAbundanceWithTruncationSignature (BELParser::Language::Version1_0::Functions::ProteinAbundance::Signatures)
ProteinAbundanceWithVariantSignature (BELParser::Language::Version2_0::Functions::ProteinAbundance::Signatures)
ProteinModification (BELParser::Language::Version1_0::Functions)
ProteinModification (BELParser::Language::Version2_0::ValueEncodings)
ProteinModification (BELParser::Language::Version2_0::ReturnTypes)
ProteinModification (BELParser::Language::Version2_0::Functions)
ProteinModification (BELParser::Language::Version1_0::ReturnTypes)
ProteinModificationTransformation (BELParser::Language::Version1_0::Upgrades)
ProteinModificationWithCovalentAminoPositionSignature (BELParser::Language::Version1_0::Functions::ProteinModification::Signatures)
ProteinModificationWithCovalentAminoSignature (BELParser::Language::Version1_0::Functions::ProteinModification::Signatures)
ProteinModificationWithCovalentSignature (BELParser::Language::Version1_0::Functions::ProteinModification::Signatures)
ProteinModificationWithTypeAminoPositionSignature (BELParser::Language::Version2_0::Functions::ProteinModification::Signatures)
ProteinModificationWithTypeAminoSignature (BELParser::Language::Version2_0::Functions::ProteinModification::Signatures)
ProteinModificationWithTypeSignature (BELParser::Language::Version2_0::Functions::ProteinModification::Signatures)

QuotedValue (BELParser::Completion)
Quoting (BELParser)

RNAAbundance (BELParser::Language::Version1_0::ValueEncodings)
RNAAbundance (BELParser::Language::Version1_0::Functions)
RNAAbundance (BELParser::Language::Version2_0::ValueEncodings)
RNAAbundance (BELParser::Language::Version2_0::ReturnTypes)
RNAAbundance (BELParser::Language::Version1_0::ReturnTypes)
RNAAbundance (BELParser::Language::Version2_0::Functions)
RNAAbundanceSignature (BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures)
RNAAbundanceSignature (BELParser::Language::Version1_0::Functions::RNAAbundance::Signatures)
RNAAbundanceWithFusionSignature (BELParser::Language::Version1_0::Functions::RNAAbundance::Signatures)
RNAAbundanceWithFusionSignature (BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures)
RNAAbundanceWithLocationSignature (BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures)
RNAAbundanceWithVariantSignature (BELParser::Language::Version2_0::Functions::RNAAbundance::Signatures)
RateLimitingStepOf (BELParser::Language::Version2_0::Relationships)
RateLimitingStepOf (BELParser::Language::Version1_0::Relationships)
ReactantIn (BELParser::Language::Version2_0::Relationships)
ReactantIn (BELParser::Language::Version1_0::Relationships)
Reactants (BELParser::Language::Version1_0::ReturnTypes)
Reactants (BELParser::Language::Version2_0::ReturnTypes)
Reactants (BELParser::Language::Version2_0::Functions)
Reactants (BELParser::Language::Version1_0::Functions)
ReactantsSignature (BELParser::Language::Version1_0::Functions::Reactants::Signatures)
ReactantsSignature (BELParser::Language::Version2_0::Functions::Reactants::Signatures)
Reaction (BELParser::Language::Version2_0::Functions)
Reaction (BELParser::Language::Version1_0::Functions)
ReactionSignature (BELParser::Language::Version2_0::Functions::Reaction::Signatures)
ReactionSignature (BELParser::Language::Version1_0::Functions::Reaction::Signatures)
Reader (BELParser::Resource)
Reader (BEL::Translator::Plugins::BelScript)
Regulates (BELParser::Language::Version2_0::Relationships)
Relationship (BELParser::Language)
Relationship (BELParser::Parsers::AST)
Relationship (BELParser::Parsers::Expression)
RelationshipCompleter (BELParser::Completion)
RelationshipDeprecation (BELParser::Language::Semantics)
RelationshipDeprecationWarning (BELParser::Language::Semantics)
RelationshipNotListable (BELParser::Language::Semantics)
RelationshipNotMultipleWarning (BELParser::Language::Semantics)
Relationships (BELParser::Language::Version2_0)
Relationships (BELParser::Language::Version1_0)
Resource (BELParser)
ResourceURLReader (BELParser::Resource)
Resources (BELParser)
Result (BELParser::Language::ExpressionValidator)
ReturnTypes (BELParser::Language::Version2_0)
ReturnTypes (BELParser::Language::Version1_0)
RibosylationActivity (BELParser::Language::Version1_0::ReturnTypes)
RibosylationActivity (BELParser::Language::Version1_0::Functions)
RibosylationActivityWithComplexAbundanceSignature (BELParser::Language::Version1_0::Functions::RibosylationActivity::Signatures)
RibosylationActivityWithProteinAbundanceSignature (BELParser::Language::Version1_0::Functions::RibosylationActivity::Signatures)

SPARQLReader (BELParser::Resource)
Script (BELParser)
SemanticASTNode (BELParser::Language::Semantics)
SemanticAminoAcidOf (BELParser::Language::Semantics)
SemanticAny (BELParser::Language::Semantics)
SemanticArgument (BELParser::Language::Semantics)
SemanticCovalentProteinModificationOf (BELParser::Language::Semantics)
SemanticEncodingOf (BELParser::Language::Semantics)
SemanticFunction (BELParser::Language::Semantics)
SemanticFunctionOf (BELParser::Language::Semantics)
SemanticHasEncoding (BELParser::Language::Semantics)
SemanticHasNamespace (BELParser::Language::Semantics)
SemanticIdentifier (BELParser::Language::Semantics)
SemanticIsAminoAcidRange (BELParser::Language::Semantics)
SemanticIsNil (BELParser::Language::Semantics)
SemanticIsSequencePosition (BELParser::Language::Semantics)
SemanticMatch (BELParser::Language::Semantics)
SemanticNamespaceOf (BELParser::Language::Semantics)
SemanticParameter (BELParser::Language::Semantics)
SemanticPrefix (BELParser::Language::Semantics)
SemanticReturnTypeOf (BELParser::Language::Semantics)
SemanticStatement (BELParser::Language::Semantics)
SemanticTerm (BELParser::Language::Semantics)
SemanticValue (BELParser::Language::Semantics)
SemanticVariadicArguments (BELParser::Language::Semantics)
Semantics (BELParser::Language)
SemanticsArgumentLengthWarning (BELParser::Language::Semantics)
SemanticsFunction (BELParser::Language::Semantics)
SemanticsInvalidAminoAcidRangeWarning (BELParser::Language::Semantics)
SemanticsInvalidAminoAcidWarning (BELParser::Language::Semantics)
SemanticsInvalidEncodingWarning (BELParser::Language::Semantics)
SemanticsInvalidFunctionWarning (BELParser::Language::Semantics)
SemanticsInvalidNamespaceWarning (BELParser::Language::Semantics)
SemanticsInvalidProteinModificationWarning (BELParser::Language::Semantics)
SemanticsInvalidReturnTypeWarning (BELParser::Language::Semantics)
SemanticsInvalidSequencePositionWarning (BELParser::Language::Semantics)
SemanticsMissingEncodingWarning (BELParser::Language::Semantics)
SemanticsMissingNamespaceWarning (BELParser::Language::Semantics)
SemanticsNilNodeWarning (BELParser::Language::Semantics)
SemanticsNotNilNodeWarning (BELParser::Language::Semantics)
SemanticsResult (BELParser::Language::Semantics)
SemanticsTypeWarning (BELParser::Language::Semantics)
SemanticsWarning (BELParser::Language::Semantics)
Serializer (BELParser::Parsers)
Set (BELParser::Script::State)
Set (BELParser::Parsers::BELScript)
Set (BELParser::Parsers::AST)
SetDocument (BELParser::Parsers::BELScript)
Sexp (AST)
Sexp (BELParser::Parsers::AST)
Signature (BELParser::Language)
SignatureMapping (BELParser::Language::Semantics)
SignatureMappingSuccess (BELParser::Language::Semantics)
SignatureMappingWarning (BELParser::Language::Semantics)
Signatures (BELParser::Language::Version2_0::Functions::RNAAbundance)
Signatures (BELParser::Language::Version1_0::Functions::ProteinModification)
Signatures (BELParser::Language::Version1_0::Functions::CellSecretion)
Signatures (BELParser::Language::Version1_0::Functions::RNAAbundance)
Signatures (BELParser::Language::Version2_0::Functions::Translocation)
Signatures (BELParser::Language::Version2_0::Functions::Pathology)
Signatures (BELParser::Language::Version1_0::Functions::GTPBoundActivity)
Signatures (BELParser::Language::Version2_0::Functions::Reactants)
Signatures (BELParser::Language::Version1_0::Functions::Degradation)
Signatures (BELParser::Language::Version2_0::Functions::ToLocation)
Signatures (BELParser::Language::Version1_0::Functions::Truncation)
Signatures (BELParser::Language::Version1_0::Functions::Substitution)
Signatures (BELParser::Language::Version1_0::Functions::Translocation)
Signatures (BELParser::Language::Version2_0::Functions::FromLocation)
Signatures (BELParser::Language::Version2_0::Functions::Reaction)
Signatures (BELParser::Language::Version2_0::Functions::Activity)
Signatures (BELParser::Language::Version2_0::Functions::Products)
Signatures (BELParser::Language::Version2_0::Functions::GeneAbundance)
Signatures (BELParser::Language::Version2_0::Functions::CellSecretion)
Signatures (BELParser::Language::Version1_0::Functions::TranscriptionalActivity)
Signatures (BELParser::Language::Version1_0::Functions::CatalyticActivity)
Signatures (BELParser::Language::Version1_0::Functions::ChaperoneActivity)
Signatures (BELParser::Language::Version1_0::Functions::ComplexAbundance)
Signatures (BELParser::Language::Version2_0::Functions::ComplexAbundance)
Signatures (BELParser::Language::Version1_0::Functions::Fusion)
Signatures (BELParser::Language::Version1_0::Functions::List)
Signatures (BELParser::Language::Version1_0::Functions::RibosylationActivity)
Signatures (BELParser::Language::Version2_0::Functions::MolecularActivity)
Signatures (BELParser::Language::Version1_0::Functions::MolecularActivity)
Signatures (BELParser::Language::Version1_0::Functions::PeptidaseActivity)
Signatures (BELParser::Language::Version2_0::Functions::ProteinAbundance)
Signatures (BELParser::Language::Version1_0::Functions::ProteinAbundance)
Signatures (BELParser::Language::Version1_0::Functions::KinaseActivity)
Signatures (BELParser::Language::Version1_0::Functions::GeneAbundance)
Signatures (BELParser::Language::Version1_0::Functions::Reaction)
Signatures (BELParser::Language::Version2_0::Functions::Fragment)
Signatures (BELParser::Language::Version2_0::Functions::Variant)
Signatures (BELParser::Language::Version1_0::Functions::PhosphataseActivity)
Signatures (BELParser::Language::Version2_0::Functions::CompositeAbundance)
Signatures (BELParser::Language::Version1_0::Functions::TransportActivity)
Signatures (BELParser::Language::Version1_0::Functions::MicroRNAAbundance)
Signatures (BELParser::Language::Version2_0::Functions::Fusion)
Signatures (BELParser::Language::Version1_0::Functions::BiologicalProcess)
Signatures (BELParser::Language::Version1_0::Functions::CompositeAbundance)
Signatures (BELParser::Language::Version2_0::Functions::MicroRNAAbundance)
Signatures (BELParser::Language::Version2_0::Functions::BiologicalProcess)
Signatures (BELParser::Language::Version1_0::Functions::Products)
Signatures (BELParser::Language::Version2_0::Functions::CellSurfaceExpression)
Signatures (BELParser::Language::Version1_0::Functions::Reactants)
Signatures (BELParser::Language::Version2_0::Functions::Location)
Signatures (BELParser::Language::Version1_0::Functions::CellSurfaceExpression)
Signatures (BELParser::Language::Version2_0::Functions::Abundance)
Signatures (BELParser::Language::Version2_0::Functions::ProteinModification)
Signatures (BELParser::Language::Version2_0::Functions::Degradation)
Signatures (BELParser::Language::Version1_0::Functions::Abundance)
Signatures (BELParser::Language::Version1_0::Functions::Pathology)
Signatures (BELParser::Language::Version2_0::Functions::List)
SimpleStatement (BELParser::Parsers::Expression)
SimpleStatement (BELParser::Parsers::AST)
SimpleStatementResult (BELParser::Language::ExpressionValidator)
Specification (BELParser::Language::Version1_0)
Specification (BELParser::Language::Version2_0)
Specification (BELParser::Language)
State (BELParser::Script)
StateAggregator (BELParser::Script)
StateFunction (BELParser::Script)
Statement (BELParser::Expression::Model)
Statement (BELParser::Parsers::AST)
StatementAutocomplete (BELParser::Parsers::Expression)
String (BELParser::Parsers::Common)
String (BELParser::Parsers::AST)
SubProcessOf (BELParser::Language::Version2_0::Relationships)
SubProcessOf (BELParser::Language::Version1_0::Relationships)
Subject (BELParser::Parsers::AST)
Substitution (BELParser::Language::Version1_0::ReturnTypes)
Substitution (BELParser::Language::Version1_0::Functions)
SubstitutionWithReferencePositionVariantSignature (BELParser::Language::Version1_0::Functions::Substitution::Signatures)
Syntax (BELParser::Language)
Syntax (BELParser::Script)
SyntaxError (BELParser::Language::Syntax)
SyntaxFunction (BELParser::Language::Syntax)
SyntaxResult (BELParser::Language::Syntax)
SyntaxWarning (BELParser::Language::Syntax)

Term (BELParser::Expression::Model)
Term (BELParser::Parsers::AST)
Term (BELParser::Parsers::Expression)
TermResult (BELParser::Language::ExpressionValidator)
TermTransformation (BELParser::Language)
ToLocation (BELParser::Language::Version2_0::ReturnTypes)
ToLocation (BELParser::Language::Version2_0::Functions)
ToLocationAnySignature (BELParser::Language::Version2_0::Functions::ToLocation::Signatures)
ToLocationSignature (BELParser::Language::Version2_0::Functions::ToLocation::Signatures)
Tracer (BELParser::Parsers)
TranscribedTo (BELParser::Language::Version2_0::Relationships)
TranscribedTo (BELParser::Language::Version1_0::Relationships)
TranscriptionalActivity (BELParser::Language::Version1_0::ReturnTypes)
TranscriptionalActivity (BELParser::Language::Version1_0::Functions)
TranscriptionalActivityOfComplexAbundanceSignature (BELParser::Language::Version1_0::Functions::TranscriptionalActivity::Signatures)
TranscriptionalActivityOfProteinAbundanceSignature (BELParser::Language::Version1_0::Functions::TranscriptionalActivity::Signatures)
Transformation (BELParser::Language::Version2_0::Upgrades)
TranslatedTo (BELParser::Language::Version2_0::Relationships)
TranslatedTo (BELParser::Language::Version1_0::Relationships)
Translocates (BELParser::Language::Version1_0::Relationships)
Translocates (BELParser::Language::Version2_0::Relationships)
Translocation (BELParser::Language::Version2_0::Functions)
Translocation (BELParser::Language::Version1_0::Functions)
TranslocationSignature (BELParser::Language::Version2_0::Functions::Translocation::Signatures)
TranslocationSignature (BELParser::Language::Version1_0::Functions::Translocation::Signatures)
TranslocationTransformation (BELParser::Language::Version1_0::Upgrades)
TransportActivity (BELParser::Language::Version1_0::ReturnTypes)
TransportActivity (BELParser::Language::Version1_0::Functions)
TransportActivityOfComplexAbundanceSignature (BELParser::Language::Version1_0::Functions::TransportActivity::Signatures)
TransportActivityOfProteinAbundanceSignature (BELParser::Language::Version1_0::Functions::TransportActivity::Signatures)
Truncation (BELParser::Language::Version1_0::ReturnTypes)
Truncation (BELParser::Language::Version1_0::Functions)
TruncationWithPositionSignature (BELParser::Language::Version1_0::Functions::Truncation::Signatures)

UndefinedAnnotation (BELParser::Script::Syntax)
UndefinedAnnotationError (BELParser::Script::Syntax)
UndefinedAnnotationValue (BELParser::Script::Syntax)
UndefinedAnnotationValueWarning (BELParser::Script::Syntax)
UndefinedNamespace (BELParser::Language::Syntax)
UndefinedNamespaceError (BELParser::Language::Syntax)
UndefinedNamespaceValue (BELParser::Language::Syntax)
UndefinedNamespaceValueWarning (BELParser::Language::Syntax)
UnresolvableNamespace (BELParser::Script::Syntax)
UnresolvableNamespaceError (BELParser::Script::Syntax)
Unset (BELParser::Script::State)
Unset (BELParser::Parsers::AST)
Unset (BELParser::Parsers::BELScript)
UnsupportedBELVersion (BELParser::Script::Syntax)
UnsupportedBELVersionWarning (BELParser::Script::Syntax)
Upgrades (BELParser::Language::Version1_0)
Upgrades (BELParser::Language::Version2_0)
Uri (BELParser::Parsers::AST)
Url (BELParser::Parsers::AST)

Valid (BELParser::Language::Semantics)
Valid (BELParser::Language::Syntax)
Validator (BELParser::Expression)
Validator (BELParser::Script)
Value (BELParser::Parsers::AST)
Value (BELParser::Resource)
ValueEncodings (BELParser::Language::Version1_0)
ValueEncodings (BELParser::Language::Version2_0)
Variant (BELParser::Language::Version2_0::ReturnTypes)
Variant (BELParser::Language::Version2_0::Functions)
VariantSignature (BELParser::Language::Version2_0::Functions::Variant::Signatures)
VariationTransformation (BELParser::Language::Version1_0::Upgrades)
Version (BELParser)
Version1_0 (BELParser::Language)
Version2_0 (BELParser::Language)

WildcardMatchParameterCompleter (BELParser::Completion)
Writer (BEL::Translator::Plugins::BelScript)