Class: Bio::BioAlignment::Alignment

Inherits:

Object

• Object
• Bio::BioAlignment::Alignment

Includes:

Pal2Nal, Enumerable

Defined in:

lib/bio-alignment/alignment.rb

Instance Attribute Summary

• #sequences ⇒ Object (also: #rows)

  Returns the value of attribute sequences.

Instance Method Summary

• #each ⇒ Object
• #initialize ⇒ Alignment constructor

  A new instance of Alignment.

Methods included from Pal2Nal

#pal2nal

Constructor Details

#initialize ⇒ Alignment

Returns a new instance of Alignment.

# File 'lib/bio-alignment/alignment.rb', line 14

def initialize
  @sequences = []
end

Instance Attribute Details

#sequences ⇒ Object Also known as: rows

Returns the value of attribute sequences.

# File 'lib/bio-alignment/alignment.rb', line 12

def sequences
  @sequences
end

Instance Method Details

#each ⇒ Object

# File 'lib/bio-alignment/alignment.rb', line 20

def each
  rows.each { | seq | yield seq }
end