Class: Bio::CdHitReport

Inherits:
Object
  • Object
show all
Includes:
Enumerable
Defined in:
lib/bio-cd-hit-report/cd-hit-report.rb

Instance Method Summary collapse

Constructor Details

#initialize(file) ⇒ CdHitReport

Returns a new instance of CdHitReport.



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# File 'lib/bio-cd-hit-report/cd-hit-report.rb', line 8

def initialize(file)
  @report  = CdHitParser.new
  @report.report_file = file
end

Instance Method Details

#clusters ⇒ Object 



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# File 'lib/bio-cd-hit-report/cd-hit-report.rb', line 13

def clusters
  cls = []
  @report.each do |c|
    cls << c
  end
  cls
end

#each_cluster(&block) ⇒ Object 



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# File 'lib/bio-cd-hit-report/cd-hit-report.rb', line 21

def each_cluster(&block)
  clusters.each(&block)
end

#get_members(cluster_id) ⇒ Object Also known as: get_cluster 



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# File 'lib/bio-cd-hit-report/cd-hit-report.rb', line 29

def get_members(cluster_id)
  clusters.select {|cluster| cluster.cluster_id == cluster_id.to_s}.map{|c|c.members}
end

#total_clusters ⇒ Object 



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# File 'lib/bio-cd-hit-report/cd-hit-report.rb', line 25

def total_clusters
  clusters.size
end