Class: Bio::CNLS::Result

Inherits:
Object
  • Object
show all
Defined in:
lib/bio/cnls_screenscraper/cnls_screenscraper.rb

Defined Under Namespace

Classes: BipartiteNLS, MonopartiteNLS, NLS

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize ⇒ Result

Returns a new instance of Result.



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# File 'lib/bio/cnls_screenscraper/cnls_screenscraper.rb', line 16

def initialize
  @signals = []
end

Instance Attribute Details

#signals ⇒ Object

Returns the value of attribute signals.



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# File 'lib/bio/cnls_screenscraper/cnls_screenscraper.rb', line 14

def signals
  @signals
end

Instance Method Details

#bipartite_predicted?(minimum_score = nil) ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/bio/cnls_screenscraper/cnls_screenscraper.rb', line 46

def bipartite_predicted?(minimum_score=nil)
  @signals.each do |s|
    if s.kind_of?(BipartiteNLS)
      return true if minimum_score.nil? #if no cutoff, return true
      return true if s.score >= minimum_score #otherwise apply the cutoff
    end
  end
  return false
end

#max_bipartite_score ⇒ Object 



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# File 'lib/bio/cnls_screenscraper/cnls_screenscraper.rb', line 66

def max_bipartite_score
  max = 0.0
  @signals.each do |s|
    if s.kind_of?(BipartiteNLS) and s.score > max
      max = s.score
    end
  end
  return max
end

#max_monopartite_score ⇒ Object 



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# File 'lib/bio/cnls_screenscraper/cnls_screenscraper.rb', line 56

def max_monopartite_score
  max = 0.0
  @signals.each do |s|
    if s.kind_of?(MonopartiteNLS) and s.score > max
      max = s.score
    end
  end
  return max
end

#monopartite_predicted?(minimum_score = nil) ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/bio/cnls_screenscraper/cnls_screenscraper.rb', line 36

def monopartite_predicted?(minimum_score=nil)
  @signals.each do |s|
    if s.kind_of?(MonopartiteNLS)
      return true if minimum_score.nil? #if no cutoff, return true
      return true if s.score >= minimum_score #otherwise apply the cutoff
    end
  end
  return false
end

#predicted? ⇒ Boolean

Is this result a positive prediction or negative prediction?

Returns:

  • (Boolean) 


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# File 'lib/bio/cnls_screenscraper/cnls_screenscraper.rb', line 32

def predicted?
  !signals.nil? and !signals.empty? 
end