Module: Bio::GFFbrowser::Helpers::Validate

Included in:
Digest::Parser
Defined in:
lib/bio/db/gff/gffvalidate.rb

Instance Method Summary collapse

Instance Method Details

#validate_cdss ⇒ Object 



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# File 'lib/bio/db/gff/gffvalidate.rb', line 15

def validate_cdss 
  return if not @options[:validate]
  @cdslist.validate_seqname
  # validate CDS sections do not overlap
  @cdslist.validate_nonoverlapping
  # validate sections share the parent
  @cdslist.validate_shared_parent
  # display unhandled features
end

#validate_mrnas ⇒ Object 



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# File 'lib/bio/db/gff/gffvalidate.rb', line 8

def validate_mrnas 
  return if not @options[:validate]
  # validate gene/container/component seqname is shared
  @mrnalist.validate_seqname
  @mrnalist.validate_shared_parent
end