Feature: Join adjacent alignment blocks After filtering out sequences The sequence that caused two blocks to be separate may be removed So it can be desirable to join such blocks together
Scenario: Two blocks natively in indexed access Given indexed MAF files in "test/data" When I query for the genomic intervals | chrom | start | end | | mm8.chr7 | 80082334 | 80082471 | Then 2 blocks are obtained And the text size of block 0 is 54 And the text size of block 1 is 156
Scenario: Two blocks joined in indexed access Given indexed MAF files in "test/data" When I enable the :join_blocks parser option And I filter for only the species | mm8 | | rn4 | | oryCun1 | | hg18 | | panTro2 | | rheMac2 | | canFam2 | | loxAfr1 | | echTel1 | And I query for the genomic intervals | chrom | start | end | | mm8.chr7 | 80082334 | 80082471 | Then 1 block is obtained And the text size of block 0 is 210