Class: Bio::Ngs::Bwa::Index

Inherits:
Object
  • Object
show all
Includes:
Command::Wrapper
Defined in:
lib/bio/appl/ngs/bwa.rb

Overview

Usage: bwa index [-a bwtsw|div|is] [-c] <in.fasta>

Options: -a STR BWT construction algorithm: bwtsw or is [is]

-p STR    prefix of the index [same as fasta name]
-c        build color-space index

Method Summary

Methods included from Command::Wrapper

#class_name, #default_options, included, #initialize, #normalize_params, #options, #options=, #output, #params, #params=, #path, #path=, #pipe_ahead, #pipe_ahead=, #pipe_ahead?, #program, #reset_params, #run, #sub_program, #thor_task, #to_cmd_ary, #use_aliases?