Class: BioPlates

Inherits:
Object
  • Object
show all
Defined in:
lib/bio-plates/plates.rb

Defined Under Namespace

Classes: Plate

Class Method Summary collapse

Class Method Details

.quadrants(plates, newname = "QuadrantPlate") ⇒ Object

form quadrants from four plate Objects



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# File 'lib/bio-plates/plates.rb', line 19

def self.quadrants(plates,newname="QuadrantPlate")
  if plates.is_a? Hash
    plates = plates.sort.to_h.values
  end
  unless plates.length == 4
    warn "Number of plates supplied should be four; truncating/reusing"
    if plates.length > 4
      plates = plates[0..3]
    elsif plates.length < 4
      i = 0
      until plates.length == 4 do
        duplicate = plates[i].dup
        duplicate.wells = duplicate.wells.map(&:dup)
        plates << duplicate
 # Keep incrementing as long as there are still supplied plates, else reset
        i < plates.length ? i += 1 : i = 0
      end
    end
  end
  newplate = BioPlates::Plate.new(newname)
  plates.each.with_index do |plateobj, plateno|
    plateno = plateno + 1
    modplate = plateobj.dup
    modplate.wells.map!{|x| x.quadrantize!(plateno)}
    modplate.add_leading_zeroes!
    modplate.wells.map(&:index!)
    newplate.wells = newplate.wells + modplate.wells
  end
  newplate.wells = newplate.wells.sort_by{|w| w.well}
  newplate
end

.read(file) ⇒ Object 



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# File 'lib/bio-plates/plates.rb', line 3

def self.read(file)
  plates = Hash.new{|h,k| h[k] = BioPlates::Plate.new(k)}
  csv = CSV.read(File.open(file), headers: true, header_converters: :symbol)
  unless csv.headers.include? :well || ((csv.headers.include? :row) && (csv.headers.include? :column))
    raise "Column headers must include either Well, or Row and Column"
  end
  csv.each do |row|
    plates[row[:plate]].wells << BioPlates::Plate::Well.new(row)
  end
  plates.map{|k,v| v.add_leading_zeroes!}
  # Return a hash of Plate Objects for all the plates in the CSV
  #plates.each.map!{|k,v| v.name = k}
  plates
end