Class: BioRaxml::Raxml

Inherits:

Object

Object
BioRaxml::Raxml

show all

Defined in:: lib/bio-raxml/raxml.rb

Instance Method Summary collapse

#initialize(opts) ⇒ Raxml constructor

A new instance of Raxml.
#run_cmd ⇒ Object

Constructor Details

#initialize(opts) ⇒ `Raxml`

Returns a new instance of Raxml.

# File 'lib/bio-raxml/raxml.rb', line 3

def initialize(opts)
  @phylip = opts[:phylip]
  @name = opts[:name]
end

Instance Method Details

#run_cmd ⇒ `Object`



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# File 'lib/bio-raxml/raxml.rb', line 7

def run_cmd
  cmd = "raxmlHPC-SSE3 -s #{@phylip} -n #{@name} -p 12345 -m GTRGAMMA"
end