Module: Bio::RestrictionEnzyme::CutSymbol
- Included in:
- Bio::RestrictionEnzyme, Bio::RestrictionEnzyme, DoubleStranded, DoubleStranded, DoubleStranded::AlignedStrands, Range::SequenceRange::CalculatedCuts, SingleStrand, SingleStrand::CutLocationsInEnzymeNotation, SingleStrand::CutLocationsInEnzymeNotation, StringFormatting, StringFormatting
- Defined in:
- lib/bio/util/restriction_enzyme/cut_symbol.rb
Overview
Usage
#require 'bio/util/restriction_enzyme/cut_symbol'
require 'cut_symbol'
include Bio::RestrictionEnzyme::CutSymbol
cut_symbol # => "^"
set_cut_symbol('|') # => "|"
cut_symbol # => "|"
escaped_cut_symbol # => "\\|"
re_cut_symbol # => /\|/
set_cut_symbol('^') # => "^"
"abc^de" =~ re_cut_symbol # => 3
"abc^de" =~ re_cut_symbol_adjacent # => nil
"abc^^de" =~ re_cut_symbol_adjacent # => 3
"a^bc^^de" =~ re_cut_symbol_adjacent # => 4
"a^bc^de" =~ re_cut_symbol_adjacent # => nil
Defined Under Namespace
Classes: CutSymbol__
Instance Method Summary collapse
-
#cut_symbol ⇒ Object
Get the token that’s used as the cut symbol in a restriction enzyme sequece.
-
#escaped_cut_symbol ⇒ Object
Get the token that’s used as the cut symbol in a restriction enzyme sequece with a back-slash preceding it.
-
#re_cut_symbol ⇒ Object
A Regexp of the cut_symbol.
-
#re_cut_symbol_adjacent ⇒ Object
Used to check if multiple cut symbols are next to each other.
-
#set_cut_symbol(glyph) ⇒ Object
Set the token to be used as the cut symbol in a restriction enzyme sequece.
Instance Method Details
#cut_symbol ⇒ Object
Get the token that’s used as the cut symbol in a restriction enzyme sequece
Arguments
-
none
- Returns
-
glyph
44 |
# File 'lib/bio/util/restriction_enzyme/cut_symbol.rb', line 44 def cut_symbol; CutSymbol__.cut_symbol; end |
#escaped_cut_symbol ⇒ Object
Get the token that’s used as the cut symbol in a restriction enzyme sequece with a back-slash preceding it.
Arguments
-
none
- Returns
-
\glyph
53 |
# File 'lib/bio/util/restriction_enzyme/cut_symbol.rb', line 53 def escaped_cut_symbol; CutSymbol__.escaped_cut_symbol; end |
#re_cut_symbol ⇒ Object
A Regexp of the cut_symbol.
Arguments
-
none
- Returns
-
RegExp
71 72 73 |
# File 'lib/bio/util/restriction_enzyme/cut_symbol.rb', line 71 def re_cut_symbol %r"#{escaped_cut_symbol}" end |
#re_cut_symbol_adjacent ⇒ Object
Used to check if multiple cut symbols are next to each other.
Arguments
-
none
- Returns
-
RegExp
61 62 63 |
# File 'lib/bio/util/restriction_enzyme/cut_symbol.rb', line 61 def re_cut_symbol_adjacent %r"#{escaped_cut_symbol}{2}" end |
#set_cut_symbol(glyph) ⇒ Object
Set the token to be used as the cut symbol in a restriction enzyme sequece
Starts as ^ character
Arguments
-
glyph
: The single character to be used as the cut symbol in an enzyme sequence
- Returns
-
glyph
34 35 36 |
# File 'lib/bio/util/restriction_enzyme/cut_symbol.rb', line 34 def set_cut_symbol(glyph) CutSymbol__.cut_symbol = glyph end |