Class: Bio::RestrictionEnzyme::Range::HorizontalCutRange
- Defined in:
- lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb
Instance Attribute Summary collapse
-
#c_cut_left ⇒ Object
readonly
Returns the value of attribute c_cut_left.
-
#c_cut_right ⇒ Object
readonly
Returns the value of attribute c_cut_right.
-
#hcuts ⇒ Object
readonly
Returns the value of attribute hcuts.
-
#max ⇒ Object
readonly
Returns the value of attribute max.
-
#min ⇒ Object
readonly
Returns the value of attribute min.
-
#p_cut_left ⇒ Object
readonly
Returns the value of attribute p_cut_left.
-
#p_cut_right ⇒ Object
readonly
Returns the value of attribute p_cut_right.
Instance Method Summary collapse
-
#include?(i) ⇒ Boolean
Check if a location falls within the minimum or maximum values of this range.
-
#initialize(left, right = left) ⇒ HorizontalCutRange
constructor
A new instance of HorizontalCutRange.
Constructor Details
#initialize(left, right = left) ⇒ HorizontalCutRange
Returns a new instance of HorizontalCutRange.
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# File 'lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb', line 15 def initialize( left, right=left ) raise "left > right" if left > right # The 'range' here is actually off by one on the left # side in relation to a normal CutRange, so using the normal # variables from CutRange would result in bad behavior. # # See below - the first horizontal cut is the primary cut plus one. # # 1 2 3 4 5 6 7 # G A|T T A C A # +-----+ # C T A A T|G T # 1 2 3 4 5 6 7 # # Primary cut = 2 # Complement cut = 5 # Horizontal cuts = 3, 4, 5 @p_cut_left = nil @p_cut_right = nil @c_cut_left = nil @c_cut_right = nil @min = left # NOTE this used to be 'nil', make sure all tests work @max = right # NOTE this used to be 'nil', make sure all tests work @range = (@min..@max) unless @min == nil or @max == nil # NOTE this used to be 'nil', make sure all tests work @hcuts = (left..right) end |
Instance Attribute Details
#c_cut_left ⇒ Object (readonly)
Returns the value of attribute c_cut_left.
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# File 'lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb', line 11 def c_cut_left @c_cut_left end |
#c_cut_right ⇒ Object (readonly)
Returns the value of attribute c_cut_right.
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# File 'lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb', line 11 def c_cut_right @c_cut_right end |
#hcuts ⇒ Object (readonly)
Returns the value of attribute hcuts.
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# File 'lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb', line 13 def hcuts @hcuts end |
#max ⇒ Object (readonly)
Returns the value of attribute max.
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# File 'lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb', line 12 def max @max end |
#min ⇒ Object (readonly)
Returns the value of attribute min.
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# File 'lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb', line 12 def min @min end |
#p_cut_left ⇒ Object (readonly)
Returns the value of attribute p_cut_left.
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# File 'lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb', line 10 def p_cut_left @p_cut_left end |
#p_cut_right ⇒ Object (readonly)
Returns the value of attribute p_cut_right.
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# File 'lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb', line 10 def p_cut_right @p_cut_right end |
Instance Method Details
#include?(i) ⇒ Boolean
Check if a location falls within the minimum or maximum values of this range.
Arguments
-
i
: Location to check if it is included in the range
- Returns
-
true
orfalse
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# File 'lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb', line 53 def include?(i) @range.include?(i) end |