Class: Bio::MutationArray

Inherits:
Array
  • Object
show all
Includes:
VepHgvs
Defined in:
lib/bio-sam-mutation/bio/mutation_array.rb

Instance Method Summary collapse

Methods included from VepHgvs

consequences_for_transcript, #vep

Instance Method Details

#to_hgvs(reference_type = nil) ⇒ Object 



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# File 'lib/bio-sam-mutation/bio/mutation_array.rb', line 3

def to_hgvs(reference_type=nil)
  if length > 0 && reference_type.nil?
    reference_type = first.seqname.match(/^ENS/) ? "c" : "g"
  end
  if length == 1
    first.to_hgvs(reference_type)
  elsif length > 1
    [first.seqname,":",reference_type,".["].join + map(&:to_hgvs).join(";") + "]"
  elsif length == 0
    nil
  end
end