Class: Bio::Bam::PGLine

Inherits:

Object

• Object
• Bio::Bam::PGLine

Defined in:

lib/bio-sambamba/samheader.rb

Overview

Represents @PG line from SAM header (program record)

Instance Method Summary

• #command_line ⇒ Object

  Command line.

• #identifier ⇒ Object

  Unique program record identifier.

• #initialize(obj) ⇒ PGLine constructor

  Wrap MessagePack record from sambamba output.

• #previous_program ⇒ Object

  Identifier of previous program in chain.

• #program_name ⇒ Object

  Program name.

• #program_version ⇒ Object

  Program version.

Constructor Details

#initialize(obj) ⇒ PGLine

Wrap MessagePack record from sambamba output

# File 'lib/bio-sambamba/samheader.rb', line 181

def initialize(obj)
  @obj = obj
end

Instance Method Details

#command_line ⇒ Object

Command line

# File 'lib/bio-sambamba/samheader.rb', line 196

def command_line
  @obj['CL']
end

#identifier ⇒ Object

Unique program record identifier

# File 'lib/bio-sambamba/samheader.rb', line 186

def identifier
  @obj['ID']
end

#previous_program ⇒ Object

Identifier of previous program in chain

# File 'lib/bio-sambamba/samheader.rb', line 201

def previous_program
  @obj['PP']
end

#program_name ⇒ Object

Program name

# File 'lib/bio-sambamba/samheader.rb', line 191

def program_name
  @obj['PN']
end

#program_version ⇒ Object

Program version

# File 'lib/bio-sambamba/samheader.rb', line 206

def program_version
  @obj['VN']
end